barSeed - Barley Seed Development Database

Probe CUST_1843_PI390587928

Source Contig U35_17515

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1843_PI390587928	Hv_44K_v2	GAGCAGTACTACCTTAAGTATTAACTGTACCTAGAGCCACTTATACTGTAAAGCTAGAAC	948	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.211	3.858	0.964	0.780	0.490	0.798
Raw	48.643	97.346	19.756	26.004	4.393	9.789

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360485	1324	2e-24	1199 - 1258	100	60 / 60	plus	ABC07373
MLOC	MLOC_59127.1	1582	2e-24	214 - 273	100	60 / 60	minus	ABC07373
MLOC	MLOC_59127.2	1301	2e-24	2 - 61	100	60 / 60	minus	ABC07373
JLOC1	JLOC1_38452.1	1502	8e-25	1321 - 1380	100	60 / 60	plus
Harvest21	ABC07373	680	3e-25	85 - 144	100	60 / 60	minus	ABC07373
Harvest21	ABC07371	649	1e-23	85 - 144	98	59 / 60	minus
Harvest35	U35_17515	1092	3e-25	949 - 1008	100	60 / 60	plus
Harvest35	U35_17514	649	1e-23	506 - 565	98	59 / 60	plus

Contig Sequence (1092 bp)

>U35_17515 1092 Hv_44K_v2
CAGATTCACCGGCTGTTTGCTCGCGAGCGCCCTCCAACAACCCAGCAGCTCGTCAAGGTC
TCCGGTGATATCCGTCCGTCGAGTTCGAGTTCGAGTCCACCATGGCGGCCGTGGCGAGGG
CGATCGTGTGCGAGGCGGCGCCGCAGAGGGCGGCGCCCCCGTCGCAGCAGCAGCAGACGA
GGCGGGACAAGATCGTGCTCCAGCCCCGCCTATCCACTCTCCGGTCGTACGGCGCCGACG
GCAGCGGCGCGGTGACGCGGAAGCGGCTGCCGGGGGAGGCCGTGGAGGAGGGCGGCGTCG
GGGGCGCGCCGCCCTTCTTCGCGTCGCTCGCCGACTACATCGAGAGCTCCCGCAAGAGCC
AGGACTTCGAGACCATCTCCGGCCGCCTCGCCATGGTGGCGTTCGCGGCGGCGGTGGCGG
TGGAGGCGGCGACGGGGGACTCGCTGTTCAAGAAGCTGGATACGGTGCAGATCGAGGAGG
CGACGGGGCTGTGCCTGGCCGTGGTGGCGTCCGCGGCCACGTTCGCGTGGGTCTCCAGCG
CGCGCGGCCGGATCGGGCAGATGCTCACCCTCGGCTGCAACTCCTTCGTGGACGGGCTCA
TCGACAACGTCGTCGACGTGCTCTTCTCCGACGACCAGATGCAGGACTGGTCCGACGACG
CCTGAGCACAGCGCACAGATGCACCACATACACGTGTAGATATACGACACGATACGGCTA
CTAGACACAGACGCTGCTTGCGCATGGTGATAGTATAGAACTAATACTAGAGATCGAAAT
CGTAGCGTTGTTATTGCATTTCCAAGCTCCATCGCTGCTGCGACTGCAAGTGGTTCCTTG
TTTCTTCAGAGATGGATGCCATGGCTCTGGTGCAGAGCTCTGCTCATCTGGAGTCTCTTT
GCCTTTGAGGGTTTTCTGTGATTGCAGCGTTGTAATCTGCATATGATGGAGCAGTACTAC
CTTAAGTATTAACTGTACCTAGAGCCACTTATACTGTAAAGCTAGAACCATGTATTCTCT
CTGCCTTCTTGGGAGTATGTTAAATGGATAAGCAATCATCTAGTATTACAGTATTAAAAA
AAAAAAAAAAAA

Homology of Contig U35_17515 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g54630.1	195	1e-54	protein\|expressed protein
Brachypodium v1_2	Bradi5g23430.1	194	6e-64
Arabidopsis v10	None