barSeed - Barley Seed Development Database

Probe CUST_18431_PI390587928

Source Contig U35_32240

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18431_PI390587928	Hv_44K_v2	CTCCTGTATCTCGAAGGCTTGCTGGTATTCTTCTTAAAATTCTTTGGATGCAAATGATTT	320	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.837	1.461	1.309	0.596	0.301	0.234
Raw	1192.787	1346.344	1168.758	779.586	144.409	123.402

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53998.1	3373	7e-23	2922 - 2982	98	60 / 61	minus	ABC14129
MLOC	MLOC_53998.2	3372	7e-23	2922 - 2982	98	60 / 61	minus	ABC14129
MLOC	MLOC_53998.3	3372	7e-23	2910 - 2970	98	60 / 61	minus	ABC14129
MLOC	MLOC_53998.4	3370	7e-23	2908 - 2968	98	60 / 61	minus	ABC14129
JLOC1	JLOC1_34734.1	3488	4e-23	465 - 525	98	60 / 61	plus
Harvest35	U35_32240	380	3e-25	321 - 380	100	60 / 60	plus

Contig Sequence (380 bp)

>U35_32240 380 Hv_44K_v2
AGCCCAACCACCTTCCCCGTCCCCGTCCCCGTCCCCGTCCGAAATCCCCACCGATCTCCC
CATCCCGGGTTCGGAACCGGCTCCCGATCGCCGCCGAGAGGTTGCGCGGGGGCAAGGAGC
AGCGGAGGATCCCGTCGGAGAGCAGCGGCGCTCGCCGTCGAAGGTTAAGCTAATGGATAT
CACTGAGGTTCTGCTAGCTACGCAGTCCCATGATGGTCAGATCCGAAATGCTGCAGAAGG
GAATATCAAGCAATTTGAGGAGCAGAGTTTTCCACAGTTTCTGCAAGCATTATCTGCTGA
GCTATCAAATGATAACAAACCTCCTGTATCTCGAAGGCTTGCTGGTATTCTTCTTAAAAT
TCTTTGGATGCAAATGATTT

Homology of Contig U35_32240 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None