- Probe CUST_1842_PI390587928
- Source Contig U35_31809
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1842_PI390587928 | Hv_44K_v2 | AAGCACAACCCTGTCAAGACCATCAAGACGAATGTCATTGGGAACTTGAACATGCTTGGA | 534 | GeneList: darkgrey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.249 | 0.229 | 1.283 | 2.757 | 1.081 | 1.033 |
| Raw | 312.041 | 436.708 | 2245.880 | 7680.447 | 1060.062 | 1100.543 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_66511.2 | 1537 | 7e-23 | 538 - 597 | 98 | 59 / 60 | plus | ABC02031 ABC38863 ABC39344 ABC49830 |
| MLOC | MLOC_66511.3 | 711 | 7e-23 | 384 - 443 | 98 | 59 / 60 | minus | ABC02031 |
| MLOC | MLOC_66511.1 | 1783 | 7e-23 | 955 - 1014 | 98 | 59 / 60 | minus | ABC02031 ABC38863 ABC39344 ABC49830 |
| JLOC1 | JLOC1_43839.1 | 1930 | 4e-23 | 770 - 829 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC02030 | 723 | 1e-23 | 407 - 466 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC02029 | 1716 | 1e-23 | 704 - 763 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_31809 | 595 | 3e-25 | 535 - 594 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_47644 | 723 | 1e-23 | 407 - 466 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_14654 | 1542 | 1e-23 | 501 - 560 | 98 | 59 / 60 | plus |
Contig Sequence (595 bp)
>U35_31809 595 Hv_44K_v2 ATCCACCTCGTCTCGTCGGTCTAATCCGATTCAAACGCGCAGCTTCCTCGTGTCCGAACT AAGCCCCAATCCCACCACCGCCGCCGCTGGTGAGCATCCGTCCGTTCATTCATCCTCTCC TTCCCTCCTTCCTCCTTCAGTCGCGATCGTCGATCAGATAGACCGTGTCCAGAATCCGGC AAGGTGCTCGGCGCGATGGCGCAGAAGGACGCCACCAATGGCAACGGCGCCACCACGCGC CCGCCGCCCACGCCCTCCCCCATCCGCTTCTCCAAGTTCTTCCAGGCCAACATGCGGATC CTGGTCACCGGCGGAGCTGGCTTCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAAC GAGAAGAACGAGGTCATTGTTGCTGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAG AAGTGGATCGGCCACCCAAGATTTGAGCTCATCCGTCACGATGTCACCGAACCACTGCTC GTGGAGGTTGACCAAATCTATCACCTTGCTTGCCCTGCCTCACCAATCTTCTACAAGCAC AACCCTGTCAAGACCATCAAGACGAATGTCATTGGGAACTTGAACATGCTTGGAC
Homology of Contig U35_31809 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g16980.5 | 223 | 9e-73 | protein|NAD dependent epimerase/dehydratase family domain containing protein, expressed |
| Brachypodium v1_2 | Bradi1g66440.2 | 254 | 4e-78 | |
| Arabidopsis v10 | AT2G28760.2 | 343 | 1e-68 | | Symbols: UXS6 | UDP-XYL synthase 6 | chr2:12336469-12338642 REVERSE LENGTH=343 |