- Probe CUST_18429_PI390587928
- Source Contig U35_32244
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_18429_PI390587928 | Hv_44K_v2 | ATCACTCCTGGTATGTTGCCTGTGAATCATTCAGTTGCATCTGAGGGGCAAGTCAAACAT | 90 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.548 | 1.109 | 1.540 | 1.032 | 0.632 | 0.491 |
| Raw | 1581.590 | 1732.830 | 2139.143 | 2176.370 | 477.327 | 414.389 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_57581.3 | 4867 | 2e-24 | 2927 - 2986 | 100 | 60 / 60 | minus | ABC06577 |
| MLOC | MLOC_57581.2 | 4877 | 2e-24 | 2937 - 2996 | 100 | 60 / 60 | minus | ABC06577 |
| MLOC | MLOC_57581.1 | 5318 | 2e-24 | 3378 - 3437 | 100 | 60 / 60 | minus | ABC06577 ABC48272 |
| JLOC1 | JLOC1_37343.2 | 6342 | 8e-25 | 2938 - 2997 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_37343.1 | 6420 | 8e-25 | 3016 - 3075 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_32244 | 252 | 3e-25 | 91 - 150 | 100 | 60 / 60 | plus |
Contig Sequence (252 bp)
>U35_32244 252 Hv_44K_v2 GGAATTCCTCGTATTTCTGTTGGCCTACTGAAACCCAACGATAAAGATATCAGAAGTAGC ATTCAGGAAACCGGATTAGCTGTTTCCAGTATCACTCCTGGTATGTTGCCTGTGAATCAT TCAGTTGCATCTGAGGGGCAAGTCAAACATGCAGATGGAGCGAAGGACGAGTCAAGTACC GAGCAATCAAGTGCTGCACCAACAGGTTCTGTTCGACCCTTATCAAGGGAAAAACCTACT GCAGAGCTTACC
Homology of Contig U35_32244 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |