barSeed - Barley Seed Development Database

Probe CUST_18425_PI390587928

Source Contig U35_44226

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18425_PI390587928	Hv_44K_v2	TCTGCTGTTGCCAACAAGTATGGTCTACTGATTCGTATTAATAAAACAAATAACTTCCCA	430	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68062.1	2759	2e-24	2113 - 2172	100	60 / 60	plus	ABC06240 ABC06241 ABC41789 ABC53017
Harvest21	ABC41789	664	3e-25	431 - 490	100	60 / 60	minus	ABC41789
Harvest35	U35_44226	664	3e-25	431 - 490	100	60 / 60	minus

Contig Sequence (664 bp)

>U35_44226 664 Hv_44K_v2
CTTTTTTTTTTTTTTTTACACAACATCACTTATTCACTATTGCGGCGATGAACCGCACCA
CACATACGGGACAGTCATAAGTTCTGATATTCTCCACTCAACCATAACAAGCATTATAGA
ACCCTAAGGTTGGTAAGATGAACCGCACCACACATATGGGACAGTCGTAAGTTCTGATAT
TCTCCACTCAACCATAACAAGCATTATAGAACCCTAAGGTTGGTAAGGAACGCCCCACAA
AATTCCAGGAAAAGGAGCTGAGGTCCAGTAACTCTCTGGATATCTAGCAGGTACTTGTTA
TCCTTGGTCTTGTAAAGCTGTAGAAAAAAAATTGAGAGCCAAATAGACAGCATATATATA
CCATCCATGCCAATTATAACACCTGAAGCATATACTATATGACCAACCAATACCATGCAG
CCTTAAAACTTGGGAAGTTATTTGTTTTATTAATACGAATCAGTAGACCATACTTGTTGG
CAACAGCAGACACATGTTGGACATTATAATTATTATTTTTCGAAAAGGAGGTTATCCCTC
GGCCTCTACATCAGAACGATGCATGCGGCCACTGCTGGACATTATAATGGTCACTTGGTA
ACAATGATGAACCGAATATAGTGGCTAGTCTTTGCGACATTGAGTAGAAAATCGAGCATT
TTTC

Homology of Contig U35_44226 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None