barSeed - Barley Seed Development Database

Probe CUST_18416_PI390587928

Source Contig U35_20276

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18416_PI390587928	Hv_44K_v2	CTTGCAAGGCAACCCTTCTGTGTGTAATGCAAAGCTCTCACTTCATTGTAATCTCTTTCC	962	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.768	1.488	0.939	0.857	0.220	0.266
Raw	221.372	283.806	166.144	245.313	21.937	28.214

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11036.4	1540	2e-24	27 - 86	100	60 / 60	minus	ABC14530
MLOC	MLOC_11036.2	2135	2e-24	81 - 140	100	60 / 60	minus	ABC14530
MLOC	MLOC_11036.3	2201	2e-24	78 - 137	100	60 / 60	minus	ABC14530
MLOC	MLOC_11036.1	6158	2e-24	468 - 527	100	60 / 60	minus	ABC14530
JLOC1	JLOC1_7266.5	2954	8e-25	2464 - 2523	100	60 / 60	plus
JLOC1	JLOC1_7266.4	2938	8e-25	2448 - 2507	100	60 / 60	plus
JLOC1	JLOC1_7266.3	2989	8e-25	2499 - 2558	100	60 / 60	plus
JLOC1	JLOC1_7266.2	1623	8e-25	1133 - 1192	100	60 / 60	plus
JLOC1	JLOC1_7266.1	1835	8e-25	1345 - 1404	100	60 / 60	plus
Harvest21	ABC14530	1022	3e-25	1 - 60	100	60 / 60	minus	ABC14530
Harvest35	U35_20276	1022	3e-25	963 - 1022	100	60 / 60	plus

Contig Sequence (1022 bp)

>U35_20276 1022 Hv_44K_v2
TACCGAGAGTTACAGATGCTTAATGACGGCCTCCATAAGTATGCAAGTGAACCGGGAATC
ATGAAGTATATCAAGATAGCAGCTATGTTGCCAGAGAAGACAGTAAGAGATGTGGCCATG
AGATGCCAGTGGATGGCGGAAAAGCAAAGTACAAGACGACGGAGGACTGAAGAACACAAT
GTTGGAAGGAAGACTAAAGACAGAAAGGACAAAATGGTGGAGTCGTCATCGTGGGCTAAC
AATCGTTCTGTTCCAACAGACACCAGAGGTTCTTCTTCTGTTACGGCAGCCTCTGACATC
GACCGTGCAATGCTTAATGTATTGGAAGAAAATGCTCGACTTCTCAATCAAATAGAAGCA
AATATTTTGACATCACAGGCTCAGAACAACATTGATCTTTTCCATCGCACAAGAAGTAAC
ATCAATAATCTTCTACAAAGCATGAGCCAAATGCCTGGAATCATGAGCAAGATGCCTAGG
TTGCCTGTTTCAGTGGATGATAAGCTTGCCGGTTATCTGCTCCCTGGTGTTAATTTGGCC
CAAGTTCTTAGCAGCAGCTATCTGAAAGAAGAGCCAAGAGGAACTTGGTGAGCCAATGCA
AAGGTGGCTCCTCGTTTTTCAGCAATAGATGAAAGGTTTGGCGAGCTCTTTGCCTCGTGT
CTGCGTCGAGAAGCAAGAGAGGCAAGAAACGTCCTTCTTTTCGTACCTAATATCCGGAGA
GCCGCACTGTGGTGTGTGCCTTCAAACACGGCGTCAAGTGTGCTCTCTCTGCAAGTCTAT
ATATGATATTAGTCATTGAAAATAGGGAGGGTTTTCGCGATTGCAGTTTTCCTCATCTTG
TTGCACATATTTATTTTTACGGTTTTCTCCCCTGGTGTCCAGCTCTTGCTCCAGTCCAAG
TGATCATCTTAACAAGTAGTGCAGCATAGAAACTTGATACAAATAATTAGGCATCTTTGT
CACTTGCAAGGCAACCCTTCTGTGTGTAATGCAAAGCTCTCACTTCATTGTAATCTCTTT
CC

Homology of Contig U35_20276 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g42020.1	291	2e-88	protein\|expressed protein
Brachypodium v1_2	Bradi3g49420.2	343	1e-104
Arabidopsis v10	None