barSeed - Barley Seed Development Database

Probe CUST_18413_PI390587928

Source Contig U35_20279

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18413_PI390587928	Hv_44K_v2	GGCATGATCTGGTGCCAGAGATTTTGTTTGTTGTATCAGTAATTTATTATTGCCATTTCA	666	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.498	1.427	1.246	0.830	0.401	0.471
Raw	8066.070	12025.300	9204.407	9542.650	1627.760	2114.767

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36734.1	1480	2e-24	1414 - 1473	100	60 / 60	plus	ABC14329
MLOC	MLOC_36734.2	1352	9e-22	1298 - 1352	100	55 / 55	plus	ABC14329
JLOC1	JLOC1_23698.1	1422	8e-25	1315 - 1374	100	60 / 60	plus
Harvest21	ABC14329	705	3e-25	25 - 84	100	60 / 60	minus	ABC14329
Harvest35	U35_20279	762	3e-25	667 - 726	100	60 / 60	plus

Contig Sequence (762 bp)

>U35_20279 762 Hv_44K_v2
ACACGAGAAGTTCTATCTCAAGTCTTCAATTTGGAACAATCTTCATCCAAATCAACTTAT
CGGACAACCTGCTGTCGTCAAGGAAATGGATTGTTTGACAGCAACCGTTGAAGAGATTCG
AGAAGTTAGAGCACAGGTTACATTGCCAATCAACCAGGATAGAACAAGGCTAGCTGCATT
GGCTGGGTGGTTTGATGTTCACTTTAGGGGTAGCAAGCAAAACCCTGCAGTTGAGGAAGT
TGAATTGAATACAGCTCCAGATGAGAATGGTGGGACACACTGGGGCCAGCAGGTATTCTT
GATGACTCCATCTCCGAGAGTAAATGAAGGGGACAGTATCAATGTTTCGTTCTCGATGGT
TCGCTCGAAAGAGAATCACCGGCTTATGGATATGGATATCACCTATGAATTGAATGAGGC
ATCTGGCAGGAAGCTGCCTGCAGTCGCAACCAAGATTTTCTTAGAGTAGAGCAAGATTGC
TGACTGGATCTGACTCGTTTGATGGAATGTCGGGGCATCGTGTGCTATCATGTGTCATTG
TGCTGCCGCATCAAAAACCTTGCCCGAAAACATTGGTCCCTGGTGTGTTTGGTTTTCATT
GTATGGCCTAATGGCCAACCTTTGTGTAATACATACTATGCGGGGTGTGTAACAGTGATA
CCATGAGGCATGATCTGGTGCCAGAGATTTTGTTTGTTGTATCAGTAATTTATTATTGCC
ATTTCATTGGTTGAGATTGGAGTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_20279 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g05090.2	281	6e-88	protein\|methyltransferase domain containing protein, expressed
Brachypodium v1_2	Bradi1g51130.2	381	2e-94
Arabidopsis v10	AT1G04870.2	383	9e-53	\| Symbols: PRMT10, ATPRMT10 \| protein arginine methyltransferase 10 \| chr1:1373485-1375598 REVERSE LENGTH=383