barSeed - Barley Seed Development Database

Probe CUST_18412_PI390587928

Source Contig U35_32251

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18412_PI390587928	Hv_44K_v2	TTCAAAGTGAGTGCGCCAAAATCGGGACACCAAAGGTTTATGAGAAAAGCTTACCTGAGG	212	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53917.1	3322	2e-24	2779 - 2838	100	60 / 60	minus	None
JLOC1	JLOC1_34669.2	3319	8e-25	534 - 593	100	60 / 60	plus
JLOC1	JLOC1_34669.1	2986	8e-25	201 - 260	100	60 / 60	plus
Harvest35	U35_32251	475	3e-25	213 - 272	100	60 / 60	plus

Contig Sequence (475 bp)

>U35_32251 475 Hv_44K_v2
TCGAGCACTGTTGGCCTACTACAAACCGAGCCCTCCTCTCTTCCCGTACACCGCCGCCAC
TCCCCCATCCCCCACCCCACACCACCAACGGCAAAACCCTCCCCCAAATTCGAAACCTCC
CCTCCGCGTCGGCTCCATCGTCCACCTCACGGACATGACGTGCAACACCATCCAGAAACG
CAGGATCGTTATTGTTGTCAAACTTGAAGTTCTTCAAAGTGAGTGCGCCAAAATCGGGAC
ACCAAAGGTTTATGAGAAAAGCTTACCTGAGGGACAGGAGCCTAGCTTACCAGCCAATGC
TGCTCAAACAAACAGTGGAAGCTATTCTGGTGGCCCAGGCATGCTGGGGTCTACAGTTGC
CCCAAAGGTGGAGCAGATTGGTAACAACCTGTCATATGGTAGAGCCAACAACAGGGGCCC
AGGCGTTGACTCTTCAATTTGTCAGCCTGTTCAACCTGGCGCTAACAATGTGTGA

Homology of Contig U35_32251 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None