barSeed - Barley Seed Development Database

Probe CUST_18408_PI390587928

Source Contig U35_32259

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18408_PI390587928	Hv_44K_v2	TCTGCCAATGAAGAGCGAACAAGAGGTCAAACGTGCAAGGTCACGAAAGGAAAATCTTGA	287	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58514.4	3351	2e-24	289 - 348	100	60 / 60	plus	None
MLOC	MLOC_58514.8	3442	2e-24	2922 - 2981	100	60 / 60	minus	None
MLOC	MLOC_58514.9	3591	2e-24	3133 - 3192	100	60 / 60	minus	None
MLOC	MLOC_58514.6	3370	2e-24	2927 - 2986	100	60 / 60	minus	None
MLOC	MLOC_58514.7	3369	2e-24	2932 - 2991	100	60 / 60	minus	None
MLOC	MLOC_58514.3	3252	2e-24	2889 - 2948	100	60 / 60	minus	None
MLOC	MLOC_58514.1	3490	2e-24	3103 - 3162	100	60 / 60	minus	None
MLOC	MLOC_58514.2	3489	2e-24	3102 - 3161	100	60 / 60	minus	None
JLOC1	JLOC1_38028.2	3429	8e-25	338 - 397	100	60 / 60	plus
JLOC1	JLOC1_38028.1	3535	8e-25	331 - 390	100	60 / 60	plus
Harvest35	U35_32259	427	3e-25	288 - 347	100	60 / 60	plus

Contig Sequence (427 bp)

>U35_32259 427 Hv_44K_v2
GAAAAGCGAGACCGGGAGGGACAGAGGAGCGGAGCGGCGGCGGCGATGGGGATCCAGGGT
TTGCTGCCGCAACTCAAGTCGATAATGGCGCCCATCAGGATGGAGGACCTGAGGGGGCAA
ACGGTCGCCGTCGACACCTACTCCTGGCTCCACAAGGGCGCCCTCTCCTGCGGCGACCGC
CTCTGCAAGGGCATCCCCACCACCAGGCACATTGAGTACTGCATGCATAGGGTTAACTTG
TTGCGGCACCATGGCGTGAAGCCAATTCTTGTATTTGATGGAGGCTTTCTGCCAATGAAG
AGCGAACAAGAGGTCAAACGTGCAAGGTCACGAAAGGAAAATCTTGAGCGTGCCAGGGAA
CATGAAGCAGCTGGGAATTCCCGTGCTGCTTTCGACTGCTATCAGAAAGCTGTTGACATT
ACACCTA

Homology of Contig U35_32259 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g56940.1	837	2e-74	protein\|flap endonuclease, putative, expressed
Brachypodium v1_2	Bradi2g51637.1	862	5e-78
Arabidopsis v10	AT1G29630.2	735	2e-63	5-3 exonuclease family protein \| chr1:10349587-10353538 FORWARD LENGTH=735