barSeed - Barley Seed Development Database

Probe CUST_183_PI390587928

Source Contig U35_19583

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_183_PI390587928	Hv_44K_v2	TTGTCATGTGACTTTGATGGGTGTCATTGTCGTAATTTGGATGATGTTTGAGGTAAAAAA	1320	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.672	1.405	1.208	0.918	0.357	0.276
Raw	2476.613	3280.144	2438.720	2884.538	403.065	332.596

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56808.3	1101	9e-22	1000 - 1054	100	55 / 55	plus	ABC12729
MLOC	MLOC_56808.2	1086	9e-22	985 - 1039	100	55 / 55	plus	ABC12729
MLOC	AK355889	1372	3e-21	1319 - 1372	100	54 / 54	plus	ABC12729
JLOC1	JLOC1_36777.2	1242	5e-22	1006 - 1060	100	55 / 55	plus
JLOC1	JLOC1_36777.1	1306	5e-22	1070 - 1124	100	55 / 55	plus
Harvest21	ABC12729	1207	3e-25	1137 - 1196	100	60 / 60	plus	ABC12729
Harvest35	U35_19583	1391	3e-25	1321 - 1380	100	60 / 60	plus

Contig Sequence (1391 bp)

>U35_19583 1391 Hv_44K_v2
GTCGGATCGCCACCCACTCGCTCTCCCTCTCCCCCCACCCCCACTCCACTCCGATCCCCC
GCCCCGCACCGCCGCCCCCAGATCCGCCCCAACCCTAGCGTCGCCGTCGCCCCCCTCCCC
GGCCCCGCCGCCGCCGCCGCCATTACAGGGTGATCGAGGAGGGAGAGGGGGAGAAGCGCG
GCCGATCGCTCGGTCAGGGTGGGGACCAAGGAGCGGAGGATGTCGAGGAGGGCGGTGAAT
CCCGGCCGCCGGGCCTCGGACGGGGGCTTGCCCACCGTCGCCAGCCTGCTCCACCACAAG
TCCCGCTCGCCGTCCGTGCTCACCATCGCCCTGCTCCTGCTGGGGGTGATTATTCTGATC
GTCTATTTCAACAGCGGCTCAGGTGTAACTGTTACGAGCAGAGAAGCTGTGAGCAGAGCT
GAAGGTTCTTGCACATCAGAAGTTATCCAGGCACTTCCTTATCTTAAAAAGGCGTACGGC
AGTGCTATGCAGAAGGTTCTCCATGTAGGCCCAGATAGCTGTACAGTAGTTTCTAACTTG
TTGAAAGAAGGGAAGGAAGCATGGGGAGTGGAGCCTTATGATTTGGAGGATGCTGATAGT
AGCTGCAAAAGCCTTGTGCGCAAGGGCTTTGTTCGTTTGTCTGATATCAAGTTCTCTCTT
CCATACCGCCCAGATTCTTTTAACCTTGTTGTTGTGTCAGATGCTTTGGATTATCTGACC
CCAAGGTATCTGAACAAAACACTTCCTGATTTAGCAAGGGTCTCCACCGATGGCCTTGTT
ATCTTTACTGGCAATCCAGGACAGCAGAAGGCCAAAGTTTCTGAGCTACCAAAATTTGGA
AGACCAGCGAAGCTGCGGAGTAATTCATGGTGGACACGCTACTTTATCCAGACAGGCTTG
ACAGAGAACGAAGGGCCATTGAAGAAGTTTGAGCAGGCTGCTTCCAAGGGCAACTACGAG
CCGGACTGTCAAATCTTCCACCTCAGCTCATAGTATCTTGCTGCGGATCGGGGCAACGCC
TATCCATGACGCCTTGGATCACCCGCCACACCGTTTTTGTAAGCAACATCTTTCTCCTGC
TTATCCCGACTGTATGCGGAGGAAGTGTCACACGAAGAGAGCCACAGCCCCTTCTGCCGT
AGGTAGTGTGTGTAGAGAGGCTTTACCAGCTGTTGCTAGATGATTCTTTCTGGAGATTAA
ATTATGTGTTATATTAAGCAAGCGAGGCCAGACGACAGATATATATGCAAGAACTTTACA
CTGTTGTACTATGTGTTACATTATTGGGTGTCAAATGTAAACTCCTCCAAGAGAGGCTGA
TTGTCATGTGACTTTGATGGGTGTCATTGTCGTAATTTGGATGATGTTTGAGGTAAAAAA
AAAAAAAAAAA

Homology of Contig U35_19583 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g05070.1	259	1e-147	protein\|expressed protein
Brachypodium v1_2	Bradi2g02900.1	259	4e-154
Arabidopsis v10	AT3G49720.1	261	1e-101	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr3:18440192-18441655 REVERSE LENGTH=261