- Probe CUST_18397_PI390587928
- Source Contig U35_20282
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_18397_PI390587928 | Hv_44K_v2 | GTTGATGTAGTTATTGCAGGCCTAACATAAACATGTAGCATCCTCTTTAAAGAAACAGAA | 354 | GeneList: bisque4 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.270 | 2.346 | 1.573 | 0.715 | 0.101 | 0.019 |
| Raw | 2782.613 | 8315.900 | 4726.780 | 3470.699 | 173.768 | 34.849 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_17147.1 | 412 | 3e-24 | 354 - 412 | 100 | 59 / 59 | plus | |
| Harvest21 | ABC12749 | 450 | 3e-25 | 355 - 414 | 100 | 60 / 60 | plus | ABC12749 |
| Harvest35 | U35_20282 | 450 | 3e-25 | 355 - 414 | 100 | 60 / 60 | plus |
Contig Sequence (450 bp)
>U35_20282 450 Hv_44K_v2 GGCAACACCGTCTAGATCCAGATCAGCAAGAAGCTCCAGCATCACCTCATGGCAATCCTC ACCAAGATTTCTAGGGCCATGTGCCTTACAGCACTAGTGCTCATGGCCACCGTTCTCTCC TTACGCGCCGATTCTCATTACCCCTACCCCGGTCATGGATGCGGCGATCCGTTTCCGTCG GAAAACTGTGATAAAGATTGTTATAAAAAGTGCTATGGCGTTTGCTACATAGGAGATGAC CAGAAGTATTACTGTTGCTGTGAACCATTACACAGAGCTGGGTCCATGAGGCCTTAGGAC GTAGTTGAAATGATACAAACATAACAGTGTGGAATAAATGTGCTTGCTCTTGATGTTGAT GTAGTTATTGCAGGCCTAACATAAACATGTAGCATCCTCTTTAAAGAAACAGAAAATGAA TTATCTTTGTCAAAAAAAAAAAAAAAAAAA
Homology of Contig U35_20282 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |