barSeed - Barley Seed Development Database

Probe CUST_18381_PI390587928

Source Contig U35_44244

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18381_PI390587928	Hv_44K_v2	AGCTAGCCTTAAGGGGTCTCCATTATATTTTCCCTATAGATAGGACTAATAGGAGGTACG	-1	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.256	2.647	1.437	0.649	0.412	0.398
Raw	440.056	561.091	262.453	180.249	41.511	45.588

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC41822	513	2e-22	4 - 62	98	58 / 59	minus
Harvest35	U35_44244	513	2e-22	4 - 62	98	58 / 59	minus

Contig Sequence (513 bp)

>U35_44244 513 Hv_44K_v2
GAACGTACCTCCTATTAGTCCTATCTATAGGGAAAATATAATGGAGACCCCTNTAAGGCT
AGNCTATTCAATTCTTCCACCAAACTACTACAAACAACAATATCCCAGAGCAGCAGCTTC
AGTTATTCTGTGCGCCCAGCGAGAATATTCTTGAAGTAAATTGCGAGAATACTCTTGAAG
TAAATTTGTCGTCAGAAGCGGTCTGTGAGCGAAACCAACTGAGCTCTGGCAAATTAGAGA
TCGGTCCAACTGCAGCAAGGGCAACATCCTTGTCAAATATAAACTCCTTGGCTGTTTCCA
TTATTGCATCGCAGTCAACAGCATCAATCCGAGCAAAAAGCTCCAAGAATGGCATTACTC
GTCCATAAGTAAGCATCTGGCGACCATTATTCTCGGAAACTGCAGTTGATCCATCAATGT
GAAGCAAAAGAGAAGATTTCAACTGATTACGAGCACGAGCAACCTCTGTCTCTGACACTC
TGAATGCAAGTCTTCTAAATTCTTCCATTATTA

Homology of Contig U35_44244 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g51390.1	506	1e-61	protein\|mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi2g47987.1	500	1e-61
Arabidopsis v10	None