barSeed - Barley Seed Development Database

Probe CUST_18379_PI390587928

Source Contig U35_44249

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18379_PI390587928	Hv_44K_v2	ATTCAATTTTGCATGGGCATCCGAACGTGGTGAGTTATGTGATATTTACGAAGAACAGCA	183	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60439.1	4178	2e-24	189 - 248	100	60 / 60	plus	ABC00383 ABC14230
JLOC1	JLOC1_39410.1	4153	8e-25	186 - 245	100	60 / 60	plus
Harvest21	ABC41833	243	3e-25	184 - 243	100	60 / 60	plus
Harvest35	U35_44249	243	3e-25	184 - 243	100	60 / 60	plus

Contig Sequence (243 bp)

>U35_44249 243 Hv_44K_v2
GGGGCGAGAAGAGTCCTTCAGCCTCGAGTCCAGCGGCCCGCCCGCCTTCGCCGCAATCAT
AAGGCTCACCCCCGACCTCGTCGACGAGATCCGGCGGGCGGAGGAGGCCGGTGGCGGCGC
CCGCATCATGTTCAACTCCAGCATCAACCCCGCGGAGAACGTTATCGATGTTGATGGCAA
AGAATTCAATTTTGCATGGGCATCCGAACGTGGTGAGTTATGTGATATTTACGAAGAACA
GCA

Homology of Contig U35_44249 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None