barSeed - Barley Seed Development Database

Probe CUST_18377_PI390587928

Source Contig U35_20291

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18377_PI390587928	Hv_44K_v2	CGCAGCTGCACGCACTTCGTGTAATGCTCGAGAAAGAAAGAATATTTGCCACTCAAAAAA	1238	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.012	1.259	1.851	1.191	0.485	0.452
Raw	166.222	320.118	418.522	411.124	59.951	59.808

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_36065.1	1686	5e-22	1555 - 1609	100	55 / 55	plus
Harvest21	ABC13622	603	3e-25	533 - 592	100	60 / 60	plus
Harvest35	U35_20291	1309	3e-25	1239 - 1298	100	60 / 60	plus

Contig Sequence (1309 bp)

>U35_20291 1309 Hv_44K_v2
GCTTTTGTTGCCCCCGAGCGACCGAGCGAGCTCTCGGTGCCCGTGCCGCCTTCCTCCACC
GCCCGCTTCCGCCTTTTCGCCACGCCCCCCTCTTTCTGTCCCCGCCTCTTCTTGGCTAGC
CGTTGAGGAGTTGAGGAAGGAGCGGCCATTGCGGTGGTGTGTGTGAGCTGCGAGGTGAGG
TGAGGATGTCGTCCGCGGTGGAAGCCATCTCCTGCTCCAAGGTCGCCGCGGCCGCGGCCG
GGCCTGAGGAGGCCAAGGAGTGCGCGGCGGTCGCGGAGCACGGCAGCGGCAACGGCAACG
GCGGGGGTGACGCCGCGCCGCATTGCGGCAAGGGCGTGGAGGAGGAGGACGAGGAGGACG
GCGAGAAGGTCCCCGAGCACATCGACCTCGGCCCCATCCTCAGCATCAAGGACCAGCTGG
AGAAGGACAAGGACGACGAGAGCCTGCGGAGGTGGAAGGAGCAGCTCCTCGGCAGCGTGG
ACTTGAACTCTGTCGGAGAGACGCTGGAGCCGGACGTGAAGATCATGAGCCTGTCCATCC
AGTCCCCGGGGCGGCCGGACATCTTCCTGCCGCTGCCGGCGGAGCTGAGCGGCAAGGGGG
TGTGGTTCACCCTCAAGGAAGGCTCCCCGTACAAGCTCAAGTTCACCTTCTCCGTCAGCA
ACAACATCGTCTCCGGCCTCCGCTACACCAACACCGTCTGGAAGACCGGCATCAAAGTGG
ACAGCGCCAAGGAGATGCTGGGCACATTCAGCCCGCAGCCGGAGCCGTACGCGTACGTGA
CGCCGGAGGAGACCACGCCGTCCGGGATGTTTGCCCGGGGATCCTACTCTGCCAAGACCA
AGTTCCTGGACGACGACCGGAAGTGCTACCTGCAGATCAACTACACCTTCGACATACGCA
GGGAGTGGCCGTCGTCAGGCTGAGCCCGATTTGTCCGGTGGCTGCCGAAGTGCCTGCCTG
CCTGCCTGGGTTACTGCTGTTACCGTTGCCGTTGAAGCAGATCGGTCTTTGTTTCGTTTG
CAGTTTTACTATTCCTGCCTGTTTTTCGTGGTTGCCGTTGCCTTAGGGCTCTTGTCTCCT
GTGGTGCGTGCGTGCGTGCGTGCGTGTAAATTGGTTCGGTTGTTTATGTGTAAAATGTCA
GTGCGTCCGTCTGTGTGTGAGAGAGCGCTTTGCCAATTGTCAGGGTCTGTTTTAAGGAAC
GAACTGTAATATTGACTTCATGTAATGCACCAGAGCGACGCAGCTGCACGCACTTCGTGT
AATGCTCGAGAAAGAAAGAATATTTGCCACTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_20291 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g48730.1	378	4e-115	protein\|rho GDP-dissociation inhibitor 1, putative, expressed
Brachypodium v1_2	Bradi3g53540.1	254	2e-116
Arabidopsis v10	AT3G07880.1	240	7e-94	\| Symbols: SCN1 \| Immunoglobulin E-set superfamily protein \| chr3:2514175-2515544 FORWARD LENGTH=240