barSeed - Barley Seed Development Database

Probe CUST_18367_PI390587928

Source Contig U35_32273

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18367_PI390587928	Hv_44K_v2	AGAAGGCTGAAAGCTTGGCGTTTAGAATTGAAGAGGAACTCTTTAAACTTTTTGGTGGAG	366	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.019	0.801	1.671	1.265	1.131	0.779
Raw	43.334	53.087	96.186	103.642	35.951	27.021

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54480.2	2381	2e-24	540 - 599	100	60 / 60	plus	None
MLOC	MLOC_54480.1	3228	2e-24	541 - 600	100	60 / 60	plus	None
JLOC1	JLOC1_35065.1	3228	8e-25	541 - 600	100	60 / 60	plus
Harvest35	U35_32273	429	3e-25	367 - 426	100	60 / 60	plus

Contig Sequence (429 bp)

>U35_32273 429 Hv_44K_v2
ATTCAGAGGCAGACAATGCTGATGTTGCTAAGAAATGCGAGCGGGATGAGAAGTTAGGCT
GTGGCATAGCATCAGACATGACCACAACCACAAATGGTGACACACAGCAACAACTGAAGC
ATCTTTCTTCAGAAGATGAAGTATTAGGTCAAAGTATGGTCGTCACAGATGAACTCTTGC
AAGGTCATGGCCTTTCTTGGGTTTCTGATTTTGCTGCTGGGATGCCTGAACCTGTGACAC
AACCTAATTTGAAGAGGGACAGGACTTCTGATATTGAGTCTGGGGTTACGGGCAATTTCA
CAGAGTCTGAATCAAAAAGAATAAAGTCTACAGATGAGGCAGCAGCAGATAAGGGTAGTA
TGATCCAGAAGGCTGAAAGCTTGGCGTTTAGAATTGAAGAGGAACTCTTTAAACTTTTTG
GTGGAGTGA

Homology of Contig U35_32273 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g07877.1	1094	1e-56
Arabidopsis v10	None