barSeed - Barley Seed Development Database

Probe CUST_18366_PI390587928

Source Contig U35_32274

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18366_PI390587928	Hv_44K_v2	GAGAACTTAGAAGTTGAATTGGCCTCCTCAAAGAGTGCTCTTGATGAGCAGTGTAAGCGT	286	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.194	1.093	1.260	0.653	0.421	0.327
Raw	346.430	470.719	488.955	369.601	88.831	77.652

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54546.4	2368	2e-24	1361 - 1420	100	60 / 60	minus	None
MLOC	MLOC_54546.5	2365	2e-24	1358 - 1417	100	60 / 60	minus	None
MLOC	MLOC_54546.1	4128	2e-24	3120 - 3179	100	60 / 60	minus	ABC07755
MLOC	MLOC_54546.2	4125	2e-24	3117 - 3176	100	60 / 60	minus	ABC07755
JLOC1	JLOC1_35112.3	6486	8e-25	3046 - 3105	100	60 / 60	plus
JLOC1	JLOC1_35112.2	6489	8e-25	3046 - 3105	100	60 / 60	plus
JLOC1	JLOC1_35112.1	4759	8e-25	1241 - 1300	100	60 / 60	plus
Harvest35	U35_32274	449	3e-25	287 - 346	100	60 / 60	plus

Contig Sequence (449 bp)

>U35_32274 449 Hv_44K_v2
AAACTATATGCTTCAGTACAAAGAAATTGCAAACTCAAATGAAGTTGCATTGAAGTAAAT
GGAATAGGCATACCAGGGTTACAAAACTGAGTCCGAGATGGCCAAAAGAAGCCTGGAAGA
TGATATCGCGAAGTTGAGAAGCAAGTTATCTGAATTTGAGAAAAGCTATGTAATGAAGTG
TGAAGAAGCTGCCGGTGCAATTGAAGTTAAAGAGAAGGATATCACTGTTCTCATGAATGA
CATTACGATCCTGAGGAATGAAGTTTCCCAGAAAGTAGCGCGGATTGAGAACTTAGAAGT
TGAATTGGCCTCCTCAAAGAGTGCTCTTGATGAGCAGTGTAAGCGTTGGCGTAGCGCACA
AGACAACTACGAGCGGCAGGTTATCCTGCAATCTGAAACAATACAGGAGCTGANCAATAC
TTCTAAGCAACTGTCTTCATTGCAGCAGG

Homology of Contig U35_32274 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g59627.1	2070	8e-76
Arabidopsis v10	None