barSeed - Barley Seed Development Database

Probe CUST_18364_PI390587928

Source Contig U35_32277

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18364_PI390587928	Hv_44K_v2	TCTGTTGGTTCAAGGTGGTTAGCTTATGCTCCCAATGGTCCTGTATTATCAAGCACTGGT	318	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.812	1.237	0.863	0.795	0.954	0.849
Raw	13.378	12.789	8.502	11.464	2.705	2.705

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371649	3911	7e-23	1097 - 1156	98	59 / 60	plus	ABC08731
MLOC	MLOC_24797.2	1924	7e-23	456 - 515	98	59 / 60	plus	None
MLOC	MLOC_24797.1	3874	7e-23	1233 - 1292	98	59 / 60	plus	None
JLOC1	JLOC1_17028.1	3862	4e-23	1217 - 1276	98	59 / 60	plus
Harvest35	U35_32277	433	3e-25	319 - 378	100	60 / 60	plus

Contig Sequence (433 bp)

>U35_32277 433 Hv_44K_v2
GAAACAAATGGCTTGGGCATGGTTCAGGGTGGTCGCTTAAGTGCACTCATCAGGGATACA
AGCAGTGAACCTCAAACTGGAAACTGCATTTCCACCCCAACAGTTGTTCGCTTCTACTCT
TTGAAGTCTCACACATATGTACATGTTCTCAGATTCCGATCTGCCGTATATATAGTTCGT
TGCAGCCCCCGGGTTGTGGCTGTAGCACTTGCAGCACAAATCTACTGCTTTGATGCTGTA
ACTCTTGAGAACAAGCTCAGTGTCCTGTCTTATCCTTTACAAGGGGCACCTGGGGCAAAC
ATTGGGTATGGTCCAATGTCTGTTGGTTCAAGGTGGTTAGCTTATGCTCCCAATGGTCCT
GTATTATCAAGCACTGGTCGTCTGAGCCCACAGAACCTCACGCCTTCTCCAGGAGTGAGC
CCATCTACTTCTC

Homology of Contig U35_32277 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g33610.3	769	1e-82	protein\|expressed protein
Brachypodium v1_2	Bradi2g25677.1	1016	6e-88
Arabidopsis v10	AT1G54710.1	927	1e-52	\| Symbols: ATATG18H, ATG18H \| homolog of yeast autophagy 18 (ATG18) H \| chr1:20417019-20420733 REVERSE LENGTH=927