- Probe CUST_18361_PI390587928
- Source Contig U35_44256
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_18361_PI390587928 | Hv_44K_v2 | GATGGCGCCGCCGCCTGCCGCCCCCGCAGCAGCACGGCCCCGTCGTCTCCCCGGCCCCGC | 209 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.764 | 0.808 | 1.087 | 1.057 | 0.994 | 1.231 |
| Raw | 1561.767 | 2362.637 | 3018.247 | 4318.463 | 1475.387 | 2034.143 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK363011 | 2357 | 2e-24 | 527 - 586 | 100 | 60 / 60 | plus | ABC07752 |
| Harvest21 | ABC41846 | 269 | 3e-25 | 210 - 269 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_44256 | 269 | 3e-25 | 210 - 269 | 100 | 60 / 60 | plus |
Contig Sequence (269 bp)
>U35_44256 269 Hv_44K_v2 CAGCTTCATCTCCTGGTTGCGGGGCGAGTTCGCCGCCGCCAACGCCATCATCGACCTCCT CGTCGTCCACCTCCGCGCCGTCGGCGACCCGGGCGAGTACGACCACGTCTTCGCCGCCGT GCAGCAGCGCCGCCACCACTGGGCGCCCGTCATCCACATGCAGCAGTTCTTCCCAGTCGC CGACGTCGCATACGCGCTGCAGCAGTCGGGATGGCGCCGCCGCCTGCCGCCCCCGCAGCA GCACGGCCCCGTCGTCTCCCCGGCCCCGC
Homology of Contig U35_44256 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi1g68600.1 | 670 | 1e-51 | |
| Arabidopsis v10 | None |