barSeed - Barley Seed Development Database

Probe CUST_1835_PI390587928

Source Contig U35_47259

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1835_PI390587928	Hv_44K_v2	ACCTTTTGACATCAGCTTTGATATTGATGGTGGACCACAAGCAGCGGACTTCATCAAGGA	560	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.970	0.924	1.995	1.792	0.835	0.823
Raw	53.738	78.242	151.247	217.727	34.481	38.033

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11265.1	1397	2e-24	562 - 621	100	60 / 60	plus	None
MLOC	MLOC_11265.2	922	2e-24	562 - 621	100	60 / 60	plus	None
JLOC1	JLOC1_7447.1	659	8e-25	161 - 220	100	60 / 60	plus
Harvest21	ABC48138	631	3e-25	561 - 620	100	60 / 60	plus
Harvest35	U35_47259	631	3e-25	561 - 620	100	60 / 60	plus

Contig Sequence (631 bp)

>U35_47259 631 Hv_44K_v2
GAGATACCGGCTGCTGGGGACCCCCTTGTCGACATCCCGGCCGCCGATTTCTTCTCTCTT
GACGTCTCGGCGGGCGTCAGGGCCGAGCCGGCCTCCCCGTCGTCGGTGGCGGCGCGGCCT
GCCGCGATGGCGACGCCCTCGAGCGCCCTCGCCCGAACGGAGCAGCCCGCGCAGGGGTCG
GAGCGCGCGTGGTTCCGAGGAGGGAGGTTGTTCAGGAGCCCCATGCTGCAGCTACACAAA
GAGATTCTTGACTTCTGTGATTTTATCTCACCTTCTGCCGAAGAGCAATCTTCACGGACA
GCTGCTGTGAAAGCAGTCTCCGATGTTGTCAAGCATATATGGCCTCATTGCAAGGTGGAA
GTCTTTGGATCTTTCAGAACAGGGCTTTATCTACCAACAAGTGATATTGATGTTGTAGTA
TTCGATACCAGGGCTAAGACTCCTCAAGGCCTCTATGCTCTTGCGAAAGCATTATCTCAA
AAAGGTGTTGCCAAAAAGATACAGGTAATAGCAAAGGCCCGCGTGCCAATTGTGAAATTC
GTGGAAAGAATTAGCGGAATACCTTTTGACATCAGCTTTGATATTGATGGTGGACCACAA
GCAGCGGACTTCATCAAGGATGCCATCAAGA

Homology of Contig U35_47259 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g48210.1	631	9e-105	protein\|PAP/25A associated domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g46260.1	620	2e-111
Arabidopsis v10	AT5G53770.1	530	6e-58	Nucleotidyltransferase family protein \| chr5:21826733-21829858 FORWARD LENGTH=530