- Probe CUST_18356_PI390587928
- Source Contig U35_32281
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_18356_PI390587928 | Hv_44K_v2 | GATACTGAAACTTTATCAGCTTCTGTGGATGCCAACGATGTGTCTGAGGCCAATTCTGGA | 350 | GeneList: darkorange2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.422 | 1.152 | 1.699 | 1.108 | 0.703 | 0.514 |
| Raw | 725.580 | 899.760 | 1172.707 | 1159.510 | 266.473 | 217.187 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_57581.3 | 4867 | 2e-24 | 3071 - 3130 | 100 | 60 / 60 | minus | ABC06577 |
| MLOC | MLOC_57581.2 | 4877 | 2e-24 | 3081 - 3140 | 100 | 60 / 60 | minus | ABC06577 |
| MLOC | MLOC_57581.1 | 5318 | 2e-24 | 3522 - 3581 | 100 | 60 / 60 | minus | ABC06577 ABC48272 |
| JLOC1 | JLOC1_37343.2 | 6342 | 8e-25 | 2794 - 2853 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_37343.1 | 6420 | 8e-25 | 2872 - 2931 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_32281 | 433 | 3e-25 | 351 - 410 | 100 | 60 / 60 | plus |
Contig Sequence (433 bp)
>U35_32281 433 Hv_44K_v2 TAAATGCTGCTGATGTTCCTTCCACGGTAATCAGCTCTGCAAAGCTGTCCTCTGCGAGCA CTGGGGAGCCCCAAGCAGTAGAAAGCTTAGATGTTGCTGCTGTTAAATCTAAGGACATTG AAATAACTCACCAAATTTCACCTGAATCTAGTGATGGCAAGATTATGCCAGATTCTACTG AAAATAAATCACGTGACTGCACGGTGGACTTGGCTGAGCAGGCACCATTACCAACTTCAG AGCCTGATAATTCAGATGCAACATCTGTTGTAACTGACCTGCAAGAGCTACCGAAAGCGT GCACAACATCTGTACCGGAGGAGCACGGTTTGACGAGTACATCACATAAGGATACTGAAA CTTTATCAGCTTCTGTGGATGCCAACGATGTGTCTGAGGCCAATTCTGGAACCTCATCAG AGTCTACCAGCCA
Homology of Contig U35_32281 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |