barSeed - Barley Seed Development Database

Probe CUST_18350_PI390587928

Source Contig U35_32289

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18350_PI390587928	Hv_44K_v2	AGATAGGCAGGGTTTCTTCCTGCCTGTAGCCATGTTGGAGAAGATCGGGTTGCCGCCGAA	243	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4537.5	2815	2e-24	2369 - 2428	100	60 / 60	minus	None
MLOC	MLOC_4537.2	3848	2e-24	3505 - 3564	100	60 / 60	minus	ABC24293
MLOC	MLOC_4537.3	3864	2e-24	3505 - 3564	100	60 / 60	minus	ABC24293
MLOC	MLOC_4537.4	4002	2e-24	3505 - 3564	100	60 / 60	minus	ABC24293
MLOC	MLOC_4537.1	3839	3e-22	3510 - 3565	100	56 / 56	minus	ABC24293
JLOC1	JLOC1_2837.2	3896	8e-25	318 - 377	100	60 / 60	plus
JLOC1	JLOC1_2837.1	3869	8e-25	291 - 350	100	60 / 60	plus
Harvest35	U35_32289	440	3e-25	244 - 303	100	60 / 60	plus

Contig Sequence (440 bp)

>U35_32289 440 Hv_44K_v2
AGCTTCGCTGGTGAAGCATCCAACCCTGGTCCTCTGCCCTACGGGCTACGGCGACCCCAC
CCACCCCCAACACAGACACCAAGCGCTACGCCTGCAAATCCTCTCCCCTCCGGCGACGGA
TCCGGCTCGGCGGCGTGCTTTTTCTCCCACCAAGGTCCGCCGCCACGCCTCAAATCTCCT
CCCCGTCCTGCGGCGGCGAAGAAGATCCGGCGTTCGTCTTCCTCCTACTTGGACCAAGGG
GCAAGATAGGCAGGGTTTCTTCCTGCCTGTAGCCATGTTGGAGAAGATCGGGTTGCCGCC
GAAGCCCTCGATGCGAGGGGCGACCTGNGTGCTGGACGCGTCAAACTGCCAGGGCTGTGC
CGCTCAGTTCTCCTTGTTACACGGAGGCATCATTGCCAAGATGTGGAGGCCTCTTCTGAG
CAGTTGCACCAGCAGAGGAT

Homology of Contig U35_32289 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None