barSeed - Barley Seed Development Database

Probe CUST_18330_PI390587928

Source Contig U35_44282

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18330_PI390587928	Hv_44K_v2	AGGATGGCTTCTGGAGCCGGTCTGGGTTTGGTAAGGGCGTCGTGATTGGGCTCCTCGACA	105	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370987	2829	2e-24	699 - 758	100	60 / 60	plus	ABC12417 ABC14748
MLOC	MLOC_52826.1	3855	2e-24	201 - 260	100	60 / 60	plus	ABC12417 ABC14748
JLOC1	JLOC1_33871.1	2724	8e-25	201 - 260	100	60 / 60	plus
Harvest21	ABC41896	576	3e-25	106 - 165	100	60 / 60	plus
Harvest35	U35_44282	576	3e-25	106 - 165	100	60 / 60	plus

Contig Sequence (576 bp)

>U35_44282 576 Hv_44K_v2
CGGACGCGCTGCGGCGCAGGGACGGCTGCATCCGGCTCTACCCCGAGGAGTTCCTGCCGC
TGGCCACCACCCACTCGCCGGGCTTCTTGGGTCTGCATCTCGGCAAGGATGGCTTCTGGA
GCCGGTCTGGGTTTGGTAAGGGCGTCGTGATTGGGCTCCTCGACACCGGCATCCTGCCTA
GCCACCCCTCCTTTGGTGACGCCGGCATGCCGCCGCCGCCCAAGAAGTGGAAGGGCGCGT
GCGAGTTCAAGGCGATTGCCGGGGCGGGCGGATGCAACAACAAGGTCATCGGCGCGCGCG
CGTTCGGCAGCGCCGCCGTCAACGACACGGCGCCCCCCGTCGACGACGCCGGCCACGGCA
CGCACACGGCCAGTACGGCCGCGGGGAACTTCGTGGAGAACGCCGATGTCCGTGGCAATG
CGCACGGGACGGCGTCCGGGATGGCGCCGCACGCGCACCTGGCCGTGTACAAGGTGTGCT
CGCGCAGCCGGTGCTCCATCATGGACGTCATCGCCGGGCTCGACGCCGCCGTCAAGGACG
GCGTCGACGTCATCTCCATGTCCATCGACGTCTCGG

Homology of Contig U35_44282 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g02750.1	755	9e-110	protein\|OsSub25 - Putative Subtilisin homologue, expressed
Brachypodium v1_2	Bradi1g77260.1	726	3e-113
Arabidopsis v10	None