- Probe CUST_18320_PI390587928
- Source Contig U35_3201
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_18320_PI390587928 | Hv_44K_v2 | CAGCTGTGGAAGAAGGCGCTGCTGCATTCCAGCCTCTGCTTCGTCATGGGCTTCTTCACC | 178 | GeneList: lightcyan1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.302 | 0.297 | 1.077 | 2.775 | 1.534 | 2.091 |
| Raw | 3.158 | 5.060 | 25.032 | 96.645 | 20.820 | 30.136 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_4722.3 | 907 | 2e-24 | 639 - 698 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_4722.2 | 1678 | 2e-24 | 1209 - 1268 | 100 | 60 / 60 | minus | ABC10435 |
| JLOC1 | JLOC1_2975.1 | 2051 | 8e-25 | 388 - 447 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC07777 | 386 | 3e-25 | 179 - 238 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_3201 | 387 | 3e-25 | 179 - 238 | 100 | 60 / 60 | plus |
Contig Sequence (387 bp)
>U35_3201 387 Hv_44K_v2 AGCCGTGCTAGCTTCTAGCTACGACACGGCACGACGCGACGCGAGGCTCTCGAGAGCGCG AGGGAGATCGTCTGCTGCGGCCAGCAGGGAGGCGTCGTCGGTGGTCTGTTTCATGGGCTC CGCCATGGAGCACGCCGGCGTGGCAGGCGGGAGGCCCAAGAAGAGCCCCGGCGGCTCGCA GCTGTGGAAGAAGGCGCTGCTGCATTCCAGCCTCTGCTTCGTCATGGGCTTCTTCACCGG CTTCGCCCCCTCCTCCGTCTCCGACTGGCGGTCCGTCGCGCCCGTCGGGGTGGGGAGCAG CCACATGGTGAGGACGCCGCACCTCATCTCCGGAGCCGTGAACCGGAGCCTGCTGGCGCG GGGCGTGATCCCGGCGCCGGGTGCCCC
Homology of Contig U35_3201 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |