barSeed - Barley Seed Development Database

Probe CUST_18319_PI390587928

Source Contig U35_3202

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18319_PI390587928	Hv_44K_v2	TGTACCGCGTTGTGTTCTACGGATAATAAACGATTGTGTTGCCGTTCATTGAATAAAAAA	1796	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.049	2.137	1.191	0.640	0.213	0.191
Raw	3654.380	6079.930	2947.183	2489.528	290.446	283.292

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358866	1855	2e-23	1778 - 1835	100	58 / 58	plus	ABC08267 ABC10838
MLOC	MLOC_10735.1	1853	2e-23	1569 - 1626	100	58 / 58	plus	ABC08267 ABC10838
JLOC1	JLOC1_7044.1	1764	1e-23	1631 - 1688	100	58 / 58	plus
Harvest21	ABC10838	1089	4e-24	995 - 1052	100	58 / 58	plus	ABC10838
Harvest35	U35_3202	1896	3e-25	1797 - 1856	100	60 / 60	plus

Contig Sequence (1896 bp)

>U35_3202 1896 Hv_44K_v2
TCGAGCACTGTTGGCCTACCACTTCCCCCAATCCCCGCCGCCAGCTCCACCATGGCGGCC
ACCACCCACGCCCCGTCCCCGTCCCTCTCCTCCCTCCTCTCCCGCCCCCGCTCCGCCGCG
CCCAACCTCCGCCTCCGCCGCCGCGTCCGCTGCGCCACCGACGCGGCCGTCCCCACCAAC
AAGCACCGGCGCGCGGCGGACGAGGACATCCGGGAGGAGGCGGCGCGGCACCGGGCCCCG
GCCAACGACTTCTCCGCCTGGTACGAGCCCTTCCCGCCGGGTCCCGGGTCCGCCGCCGAC
GAGCGCTACTCCCTGGACGAGATCGTGTACCGCTCCAGCTCGGGCGGCCTGCTCGACGTG
CGCCACGACATTGCGGCCCTGGCGCGCTACCCGGGGTCCTACTGGCGGGACCTCTTCGAC
TCCCGCGTCGGCCGCACCGTCTGGCCCTACGGCTCCGGCGTCTGGTCCAAGAAGGAGTTC
GTGCTCCCCGGGATCCACCCGGACCACATCGTCTCCCTCTTCGAGGGCAACTCCAACCTC
TTCTGGGCCGAGCGCCTCGGCCGCGACCACCTCGCCGGGATGAAGGACCTCTGGGTCAAG
CACTGCGGCATCTCCCACACGGGTTCCTTCAAGGACCTCGGCATGACCGTGCTCGTCAGC
CAGGTCAACCGCCTCCGCCGCGCCCCGCTCTCCCGCCCCATCGCCGGCGTCGGCTGCGCC
TCCACGGGGGACACCTCCGCCGCGCTCTCCGCATACTGCGCCGCCGCCGGGATCCCGGCT
ATTGTCTTCCTCCCGGCCAACCGCATCTCGCTCGAGCAGCTCATCCAGCCCATCGCCAAC
GGCGCCACCGTGCTCTCCCTCGACACCGACTTCGACGGCTGTATGAGGCTCATCAGGGAG
GTGACCGCCGAGCTGCCCATTTACCTTGCCAATTCGCTCAATTCCCTCAGGCTCGAGGGC
CAGAAGACGGCGGCCATTGAGATACTGCAGCAGTTCGATTGGGAGGTCCCTGATTGGGTC
ATCGTTCCGGGAGGCAATCTTGGAAACATATATGCTTTCTACAAAGGATTCGAGATGTGC
CGTGTTCTTGGCCTGGTTGATCGGCTGCCACGGCTTGTCTGCGCGCAGGCCGCCAATGCC
AACCCGCTGTACCACTACTACAAGTCAGGATGGACCCAATTCCAGCCACAGGTGGCCCAG
CCGACATTTGCTTCCGCGATTCAGATCGGCGACCCGGTGTCGGTCGACCGTGCGGTGGTC
GCACTCAAGGCAACAAATGGCATCGTCGCAGAGGCCACGGAGGAGGAGCTCATGAATGCA
ATGTCCCTCGCCGATCGCACAGGCATGTTTGCCTGCCCGCATACCGGGGTCGCGCTCGCG
GCGCTCTTCAAGCTCCGGGAAGAGGGCACCATCGGGGCGAATGACCGTACGGTGGTCGTC
AGCACGGCGCACGGCCTCAAGTTCTCCCAGTCCAAGATCGACTACCACGATCAGAAGATC
GAGGACATGGCCTGCAAGTATGCCAACCCTCCGGTCAGCGTGAAGGCCGACTTCGGCGCC
GTCATGGACGTCCTCAAGAAGAGGCTCAAGGGTAAGCTTTGAGCATGCCCTCGTCCTCCT
GCTGCTGCTGACCCCTCCGATTGGCTTCTGCGATTCGACTGTCTTGTGCATCTGATTCAA
ATGTGATTGGTTTGCTGTGTGGAGCATTCAAACCCTTGATTTGAAATCTTGTAGGTGAGT
GAGACTCTTGTAGGCGTGTCCCTGGGAATGGTTAGGGGGTGGGGTTGATTATCTCTTGTA
CCGCGTTGTGTTCTACGGATAATAAACGATTGTGTTGCCGTTCATTGAATAAAAAAAATC
ATTCGGTCTGTTTGCTCCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_3202 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g47640.1	522	protein\|threonine synthase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi2g17620.1	526
Arabidopsis v10	AT4G29840.1	526	\| Symbols: MTO2, TS \| Pyridoxal-5-phosphate-dependent enzyme family protein \| chr4:14599434-14601014 REVERSE LENGTH=526