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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_18318_PI390587928Hv_44K_v2AGTACCTCAACTATCGGATGCGTTGATGAACGTTCAGTGAAAATCTTTGCAAGTAAAAAA2350GeneList: darkslateblue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.8922.1521.2710.6410.1820.208
Raw 2586.7634483.0802339.7231848.209185.575230.170



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_59549.427817e-232654 - 271010057 / 57plus ABC07242 ABC39720
JLOC1JLOC1_38760.523834e-232139 - 219510057 / 57plus
JLOC1JLOC1_38760.428254e-232581 - 263710057 / 57plus
JLOC1JLOC1_38760.130334e-232789 - 284510057 / 57plus
Harvest21ABC0724224213e-252351 - 241010060 / 60plusABC07242
Harvest35U35_320324213e-252351 - 241010060 / 60plus



Contig Sequence (2421 bp)

>U35_3203 2421 Hv_44K_v2
GCGGCGCGCGAGCTTTCTACGCCCCCTCGCCTCCGCTGATTAGCACTGGCACCGGCGATT
AGCAGTATACCAGCAGTGAAGGCGAGGCCTTCGAGCCCGCAATCCCTTTTTTTCTGCTGC
TGCTGCCCGCAAGATTACAAAATCCTGCGTTTGTCCTGTTGCCGCTGCTTCCGCTGGCGC
TCTCGGGAGGGCGGCCATAGAAAGGAGATAAGGAGACGAAGGAACGAAAATAAAAGAAAT
AAAGGCTGGAGGCTTTTGGCGCTCATAATTTTTGGCCTCTCTCTGCGCTCCCCGGGGAGA
TTTTCCGGCGCTTTCTCTCTTTCTTTCCGGGTGGTGGGAGAGAATCCAGCCTCTGAATTC
GCAGTTTCTGGTTCACAGCGAGAGAGTGTTCTTGAGTCGGTGTTGATCCAATGGGCGAGA
TGAACCACCAGCCGGGGCAGCCGCCGGTGGGCGTGCCGCCGCCCATGGGGATGCAGCCCA
TGATGAACGCGCCGGTCGGCGCGGGCGCCATGCACCAGCCCTACGAGCAGTTCAACCAAC
TCAACTACTGCGTCCACTCCAATCCTTCTTGGGTGCAGGTGGCAGGGCTTGCATTCCTCC
ACTACCTAGTGATGTTGGGCTCTACTGTCATGCTTGTGTCAACTATAGTTCCTGCAATGG
GTGGTGGTCCTGGTGAGAAGGCTCGTGTAATTCAAGCGTTCCTGTTTGTGAGTGGCATTA
ATACTATGCTCCAAACACTCGTTGGGACACGACTTCCAACAGTTATGAATGCCTCCTTCG
CATTTGTTGTCCCAGTGCTGTCAATTGCCAGACAGTTTGACCCAAACGACTTTGGCAGTA
ATCACGAGAGATTCGTTCACACAATGAGAGCAACTCAAGGGGCTCTGATTGTTGCTTCAA
TCCTCAACATGATTCTTGGATACAGCAGAGCATGGGGGGCATTTGCCAAGAAATTCAGTC
CTGTAATAATGACTCCTGTTGTTTGTGTTGTTGGTCTTGGATTATTTCAAATTGGCTTTC
CTCAGGTTGGAAAATGTGTTGAGATTGGGTTGCCAATGCTAATTCTTGCAATTGTTGTGC
AACAGTATGCGCCACTTTACTTCAGACATATCCATGATCGAACCACCTTCTTGTTTGAGA
GGTATTCGTTGCTTCTTTGTATCGGCATTGTGTGGGCCTTTGCAGCTATCCTTACTGCTG
CTGGTGCATACAACCATGTTTCACTCAAGACACAACAGCACTGCCGCACTGACAAGTCTT
TCCTTATATCATCTGCTCCATGGATCAAAATTCCATACCCCTTCCATTGGGGTCCACCGA
TCTTCACTGCAGGTCATTCATTTGGAATGATGGGTGCTGTGCTTGTTTCATCTTTTGAGT
CAACTGGTGCACACTTTGCAACTGCGCGTCTAGCCGGTGCAACACCACCCCCAGCTCATG
TTCTTACTCGAAGTATTGGTTTACAGGGCATTGGGATATTCCTGGCAGGACTGTGTGGTG
CTCCAGCCGGTTCATCTGTATCAGTCGAAAACATCGGGCTACTTGGATTAACAAAAGTTG
GAAGTAGGAGAGTGATCCAGATATCAACTGGCTTCATGCTATTCTTCTCCATATTTGGGA
AGTTTGGGGCGTTCTTTGCGTCAATTCCGTTGCCAATCTTCGCAGCAATTTACTGCATCT
TGTTCGGTATCGTAGCTGCTGTGGGAATCTCGTTCAGCCAATTTGCAAACAAAAACTCAA
TGAGGAACATCTACATCATCGGACTATCCTTGTTCCTTGGCATCTCGATCCCTCAATATT
TCGCCGAGTACACCGCTTCTGCTGGCCGTGGACCTGCCCGAACAAATGCAGGATGGTTCA
ATGACATCATCAACACAGTTTTTGCCTCCGGCCCAACGGTGGCGCTGATCGTCGCGTCGC
TTCTGGACAACACGCTGGACCCCCGGGCCAACGAGGCCGACCGGGGGCTCTCATGGTTCA
CACCCTTTCTGCGCCGCCGTAAAGGGTACTCGGACCCTAGGAACGAGGAGTTCTACAGCT
ACCCGATCCGGGTCCACGACCTGATCCCGCACCGGTTTCTCTGATTCTAGAAGGACCGCT
GCTAATTATCCTGTGCTGCTGTGCGTGCATGTAAATCCCCTTTGTTCTTTTTAGCCTTTT
ACCCTTTGTGGCCTGCAGCGATTGGTGCAGTCACAGATTTCAGGTTAGTTGGATATGGTA
CAAGGAGTCAACGATGTTAGTACTTTCGTCGTTGCCGTTGTTGGCCGTTTGGGCCAAGGA
GTGGTTGACGTAGAGTTTTATTTTCCGGGTGTATCTTGTCTCTGGGGAAAAATGAATGCA
AAAGGATACTAGTACCTCAACTATCGGATGCGTTGATGAACGTTCAGTGAAAATCTTTGC
AAGTAAAAAAAAAAAAAAAAA



Homology of Contig U35_3203 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os12g39420.85570.0protein|nucleobase-ascorbate transporter, putative, expressed
Brachypodium v1_2Bradi4g03420.15570.0
Arabidopsis v10AT2G26510.15510.0| Symbols: PDE135 | Xanthine/uracil permease family protein | chr2:11274118-11277464 FORWARD LENGTH=551