barSeed - Barley Seed Development Database

Probe CUST_18315_PI390587928

Source Contig U35_3206

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18315_PI390587928	Hv_44K_v2	TAGGCGGTTGCAGTCTCGGTATTAATAATTGTGATGTTGCAAATTTGTTATGTGTGTTTG	459	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.434	2.661	1.314	0.529	0.120	0.045
Raw	12237.577	35736.787	14974.200	9793.420	786.057	310.918

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52377.1	242	7e-23	52 - 111	98	59 / 60	plus	ABC08258
JLOC1	JLOC1_33561.1	239	4e-23	52 - 111	98	59 / 60	plus
Harvest21	ABC08259	556	3e-25	452 - 511	100	60 / 60	plus
Harvest21	ABC52617	531	1e-23	443 - 502	98	59 / 60	plus
Harvest21	ABC08258	550	1e-23	442 - 501	98	59 / 60	plus	ABC08258
Harvest35	U35_3206	571	3e-25	460 - 519	100	60 / 60	plus
Harvest35	U35_3207	558	1e-23	444 - 503	98	59 / 60	plus

Contig Sequence (571 bp)

>U35_3206 571 Hv_44K_v2
GGGGACATCACCAATTCACCAAACTCCCACATAACTATCTCAAGTCCTAAAATTCCATTA
AGTAGTCCAATAGCCATGAGGACATCTAGCTTTCTCGTCATCATCGTTGTTGTGTTCCTC
TACGCCATCAGCTCACCCGCTACAGGCTGTGGGGAACGGATAGGCAACCAGTTGTGGAGC
ACAACAATAGATAATGGATGGGAACCAATTGGAAACATCAATGAAAAACACATCCAAGAG
CTCGGCAGTTGGGCAGTGTTGGAGTTCATTAAGCATGTCAACTGTGTGCTTAAGTTCAAC
AAGGTGGTGAGTGGCAGACAACAACTTGTGTCTGGAATGAACTACGAACTCATCATCAAC
GCATCAGATTTTGACGGGAAAGACGGTAAGTACAAGGCAGAGGTGTACGAGCAGAAGTGG
GCTAGCAAACGCGAGCTCCACTCATTCACCAAGGTGAACTAGGCGGTTGCAGTCTCGGTA
TTAATAATTGTGATGTTGCAAATTTGTTATGTGTGTTTGTTTATCGACTAATAAATTATC
CTCAAAAAAAAAAAAAAAAAAAAATGTTGTC

Homology of Contig U35_3206 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None