barSeed - Barley Seed Development Database

Probe CUST_18314_PI390587928

Source Contig U35_3207

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18314_PI390587928	Hv_44K_v2	CTAGGCGGTTGCAGTCTCGGTATTAATAATTATGATGTTGCAAATTTGTTATGTGTGTTT	442	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.546	2.494	1.234	0.498	0.108	0.041
Raw	12984.403	33539.510	14023.200	9226.390	704.280	279.522

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52377.1	242	3e-21	51 - 110	97	58 / 60	plus	ABC08258
JLOC1	JLOC1_33561.1	239	2e-21	51 - 110	97	58 / 60	plus
Harvest21	ABC52617	531	3e-25	442 - 501	100	60 / 60	plus
Harvest21	ABC08258	550	3e-25	441 - 500	100	60 / 60	plus	ABC08258
Harvest21	ABC08259	556	1e-23	451 - 510	98	59 / 60	plus
Harvest35	U35_3207	558	3e-25	443 - 502	100	60 / 60	plus
Harvest35	U35_3206	571	1e-23	459 - 518	98	59 / 60	plus

Contig Sequence (558 bp)

>U35_3207 558 Hv_44K_v2
GACCAAACTCCCACATAACTATCTCAAGTCCTAAAATTCCATTAAGTAGTCCAATAGCCA
TGAGGACATCTAGCTTTCTCGTCATCATCGTTGGTGTGTTCCTCTACGCCATCAGCTCAC
CCGCTACAGGTTGTGGGGAACGGATAGGCAACCAGTTGTGGAGCACAACAATAGATAATG
GATGGGAACCAATTAGAAACATCAATGACAAACACATCCAAGAGCTCGGCAGTTGGGCGG
TGTTGGAGTTCATTAAGCATGTCAACTGTGTGCTTAAGTTCAACAAGGTGGTGAGTGGCA
GACAACAACTTGTGTCTGGAATGAACTACGAACTCATCATCAACGCATCAGATTTTGGCG
GGAAAGACGGCAAGTACAAGGCAGAGGTGTACGAGCAGAAGTGGACTAGCAAACGCGAGC
TCCTCTCATTCACCAAGGTGAACTAGGCGGTTGCAGTCTCGGTATTAATAATTATGATGT
TGCAAATTTGTTATGTGTGTTTGTTTATCGACTAATAAATTATCCTCTTGCAATGTTGTC
CAAAAAAAAAAAAAAAAA

Homology of Contig U35_3207 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None