- Probe CUST_18303_PI390587928
- Source Contig U35_3319
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_18303_PI390587928 | Hv_44K_v2 | TACATATTTTTCAGCAGAGAGCGCTCCTACGGGTGTAGCGCTTTGTGTGATGAGAGATTT | 251 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.309 | 2.428 | 1.292 | 0.689 | 0.390 | 0.293 |
| Raw | 575.373 | 1715.833 | 757.244 | 612.400 | 125.227 | 104.425 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK366275 | 923 | 2e-24 | 815 - 874 | 100 | 60 / 60 | plus | ABC08172 |
| MLOC | MLOC_15075.1 | 684 | 2e-24 | 262 - 321 | 100 | 60 / 60 | plus | ABC08172 |
| JLOC1 | JLOC1_10322.1 | 596 | 8e-25 | 262 - 321 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC08172 | 906 | 3e-25 | 780 - 839 | 100 | 60 / 60 | plus | ABC08172 |
| Harvest35 | U35_3319 | 379 | 3e-25 | 252 - 311 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_3320 | 848 | 2e-21 | 780 - 832 | 100 | 53 / 53 | plus |
Contig Sequence (379 bp)
>U35_3319 379 Hv_44K_v2 CGTCGCGGTCGCCGCCGGCCCCCAGCCTGACGGCGTGGATGTAGAGACGAGTCAAGACGA GACAAGAGAAGAGAGATTCGCCCCGTCGCCCCCGGCTACGTGCTAGCTCCGTGTGTGGCC TCTCCGTGTGCGCGTAGGAATTTAGGTCGATCCTAGCAAAGCAGAGAGGGTGCTCGTTCC CCTTCGCATCCCTCCCTCCCTTTTTTTTTTGATTTCGTTTTCTGTAGGCCTCGTGCCGTC GCTGTGCCGTGTACATATTTTTCAGCAGAGAGCGCTCCTACGGGTGTAGCGCTTTGTGTG ATGAGAGATTTGCGTGCAGCCCTTGGCCTTTTTTTTTTACGAGAAACGGAAAATTGATGC GAAAAAAAAAAAAAAAAAA
Homology of Contig U35_3319 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |