barSeed - Barley Seed Development Database

Probe CUST_18302_PI390587928

Source Contig U35_3320

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18302_PI390587928	Hv_44K_v2	TGTACATATTTTTCAGCAGAGAGCGCTCCTACGGGTGTAGCGCTTTGTGTGATGAAAAAA	777	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.338	2.329	1.293	0.700	0.382	0.276
Raw	568.717	1590.417	730.169	615.689	119.412	94.902

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366275	923	9e-22	813 - 867	100	55 / 55	plus	ABC08172
MLOC	MLOC_15075.1	684	9e-22	260 - 314	100	55 / 55	plus	ABC08172
JLOC1	JLOC1_10322.1	596	5e-22	260 - 314	100	55 / 55	plus
Harvest21	ABC08172	906	2e-22	778 - 832	100	55 / 55	plus	ABC08172
Harvest35	U35_3320	848	3e-25	778 - 837	100	60 / 60	plus
Harvest35	U35_3319	379	2e-22	250 - 304	100	55 / 55	plus

Contig Sequence (848 bp)

>U35_3320 848 Hv_44K_v2
CACCACCATAGAAGCTCAGAGCAGGCAGCCCCTGAAAGAAGGCGAAAATTGCAGACGGGT
CCAGGGATCGATCCCCAACACCGGCCGCCGCGATGGGCATCTCCAGCATGCCGGCGCCCA
AGGAGAGCCTCCTGATCTACCTGCTCTACCACGCGGTCGTCTCGATCGCCGCCCTGGCGG
GGCTCCTCCGCGCCGCGCTCGCCTTCCTCGGCCTGCCCACGCCGCCGTCGCTGCTGGCCG
GGGAGGACGCGGATGGCGGCGACCAGCTCACGGCGGCCACCCCGGCCGGCCCCAGCCTGG
CCGAGAGGTTCAGGAGCAGGTTCCGCCCGGCGCGCTTTGGCCGGAGGCGGGGCGCGGCGG
CGGCGCCTGACTGCCGCGTGTGCCTGGTGCGGTTCGAGGCGGACGCCGTGGTGAACCGCC
TCCCCTGCGGCCACATGTTCCACCGCGCCTGCCTCGAGACCTGGCTCGACTACGACCACG
CCACCTGCCCGCTCTGCCGCTCCCGCCTCCTCCCGGCGGTGGCCGCTGCCGCCGACGAGT
CGTCGCGGTCGCCGCCGGCCCCCAGCCTGACGGCGTGGATGTAGAGACGAGACAAGAGAA
GAGAGATTCGCCCCGTCGCCCCCGGCTACGTGCTAGCTCCGTGTGTGGCCTCTCCGTGTG
CGCGTAGGAATTTAGGTCGATCCTAGCAAAGCAGAGAGGGTGCTCGTTCCCCTTCGCATC
CCTCCCTCCTTTTTTTTTGATTTCGTTTTCTGTAGGCCTCGTGCCGTCGCTGTGCCGTGT
ACATATTTTTCAGCAGAGAGCGCTCCTACGGGTGTAGCGCTTTGTGTGATGAAAAAAAAA
AAAAAAAA

Homology of Contig U35_3320 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g33130.1	162	5e-55
Arabidopsis v10	None