barSeed - Barley Seed Development Database

Probe CUST_18300_PI390587928

Source Contig U35_3322

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18300_PI390587928	Hv_44K_v2	ATGTTGCCGTTCCTGTTCTGCTGAGTTTGGGTTTGCAGGTCTATAACAGGTAGAAAGAAT	1640	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.947	1.674	1.016	0.905	0.535	0.608
Raw	1653.963	2206.213	1190.670	1662.185	334.764	423.306

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12482.3	2792	7e-23	21 - 81	98	60 / 61	minus	ABC07235
MLOC	MLOC_12482.2	1727	7e-23	21 - 81	98	60 / 61	minus	ABC07235
MLOC	MLOC_12482.1	1375	7e-23	21 - 81	98	60 / 61	minus	ABC07235
JLOC1	JLOC1_8374.1	2217	4e-23	2092 - 2152	98	60 / 61	plus
Harvest21	ABC07235	1700	3e-25	1641 - 1700	100	60 / 60	plus	ABC07235
Harvest35	U35_3322	1700	3e-25	1641 - 1700	100	60 / 60	plus

Contig Sequence (1700 bp)

>U35_3322 1700 Hv_44K_v2
GGCGCAGCCCGACGTCGCCGTCCACCCCGTCGACGCGGGCCGCGAGCAGGAGGCGGACGG
CGAAGATTCCTCGGGAGATTCGTCGGAGCGGAAGGCGGCCTCCACGGAAGACGACGCTGT
CCACGACGGACATAACACTGACCAAGGATCTCAAGGCGAGCACAGCCTGCCAGAGAGCTA
TCCCATCTGCTCTGACCACGACGAGTGCATGGCCCGCCCCGAGAGGATCAAGATCCAGAA
AGGTTTCATGGCGAAGGAGTCCGTGAAGGGGCACATGGTTAACGTTGTGAAAGGCCTGAA
GATATATGAAGACGTGTTCACAACAATGGAGCTCATGAAGGTTGCTGATTTCATCAATGA
AATTCGCCAGGCTGGTAGGAACGGGGAACTTTCAGGTGAAACCTTCATATTCTTCAACAA
GCAGATCAAAGGGAACAAGAGGGAGATCATTCAGCTCGGTGTCCCATTATTTCAACATAC
CACAGAGGAAACCAATTGTCATATAGAACCAATCCCAGTTGTCCTGCAGGCTGTCATCGA
CCACCTTGTTCTTTGGCGCTTAATACCAGAAAGCAGGAAACCAAACAGTGTCATCATCAA
TTTCTTCGATGAGGACGAACACTCGCAGCCCTACTTCAAGCCTCCCCACCTGGACAACCC
CATTTCCACTCTCCTGCTCTCTGAGACCTCAATGGCATTTGGAAGGTCACTTGTCACTGA
CAGCAACGGCAACTACAAGGGACCCCTCACACTCTCACTGAAGCAAGGATCACTTCTGGT
GATGCGCGGGAACAGCGCGGACATGGCACGCCATGTCGTGTGCCCGTCATCCAACCGGCG
CGTGAGCATCACGTTCGTGAGGGTGAGGCCATCGACTCCGGTGGACCTCAGCCCGCTCCC
ATCACCCACAAAGGCCATGACGCTCTGGCAGCCTCCCCCGACCATGGCAACGGCCGGCAT
GCAGAAGTCGCCCCATGGCAGCAATGGCGCTATCATCGGCTACTGTCCGGCTCCACAGGC
TATGATGGCCCCTGCGTGGGGCATGGCCGTCCGAGCGCCGGTGATGATGGTCGCCGCGCC
GGCGAGGACCATGATGATGGCGCCCTCGAGCAACATTAACAAGAGGATGGGGCGCGGCGG
CACCGGCGTGTTTCTTCCATGGACGGTGGGTCCCAAGCGGTACAACAAGCACCTCCCCCC
GCGCATTCAGAAGCGCCGGTTCTCAGCGATGATGTCGCCCATAGAGTCTCAGGGCTGAAG
CGCCGGACCGCACCTCACCCCGGCGTGGCCGTTGGATCTGATGGACAAGCCGTCGTATAT
CTCCGGTTGGTTCGTGGAGCAGTTTTTCTTCTTCTTCCGAGGCAAAAAGTTCGGAAAACG
CATGGGCGGGCACGCTGCCCTGTGTATTCTGCTTGGTGACTCTCGTTGGTGCTGGTGTTT
TTCTTTTTTGCTTCTTGTGGGGTTTGGTCTGGTCTGCCTGTAATCTAGTTGAGTTTGTGG
CCTTGTGGGTAGCACGGGCCGATGCGGTACGTAGAAATATGATGATGATGAGTAGGGATA
GGTGAGGTCAGAATGAATCAATCAAAACTTTTTTTTTTCAAAAAAAAAAAAAAAAAGAAC
TGGATGCATACATAGATGTCATGTTGCCGTTCCTGTTCTGCTGAGTTTGGGTTTGCAGGT
CTATAACAGGTAGAAAGAAT

Homology of Contig U35_3322 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g33310.1	371	0.0	protein\|oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
Brachypodium v1_2	Bradi2g25887.1	553	0.0
Arabidopsis v10	AT4G02940.1	569	2e-112	oxidoreductase, 2OG-Fe(II) oxygenase family protein \| chr4:1306658-1310699 FORWARD LENGTH=569