barSeed - Barley Seed Development Database

Probe CUST_182_PI415269222

Source Contig TA51976_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_182_PI415269222	Hv_44K_v2	AAGTTCCATACGAAGATCCGATGAACTTGAAATCAATAGAGTGCTGTCGAAATTCAGTCT	665	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.286	2.532	1.376	1.145	0.322	0.153
Raw	216.108	378.031	172.738	209.179	23.158	11.392

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC24198	732	3e-25	18 - 77	100	60 / 60	minus	ABC24198
Harvest35	U35_24512	776	3e-25	700 - 759	100	60 / 60	plus

Contig Sequence (725 bp)

>TA51976_4513 725 Hv_44K_v2
CGGCACGAGGAACTTCACCGGCCAGGGCACGACGATCTTTGAGGCCATAAAGTCGGCGGT
GGACAAGAAGACGGTGATCGACTACTCGGAGCACCCGGACAAGGGCAACGTCTCCAAGAG
CGAGGACGAGTACGACTACGCCGTGGTGGTGGTGGGCGAGCAGCCCTACGCCGAGACGGC
CGGCGACAACCTCAACCTCACCATCCCGGGCCCGGGCCCGGAGGTGATCAGGAAGGTGTG
CGAGCTCGTCAAGTGCGTGGTGGTCCTCGTCTCGGGCCGCCCGCTCGTCGTCGAGCCGTA
CCTGGACACCATGGACGCGCTCGTCGCCGCGTGGCTGCCGGGCACGGAGGGCCACGGCGT
CGCCGACGTGCTCTTCGGGGACTACGGCTTCTCAGGGAAGCTGCCCCGGACGTGGGTCAG
GTCCGTGGACCAGCTGCCCATGAACTACGGCGACAAGCTATACGACCCGCTCTTCCCCTT
CGGCTTCGGCCTCACCACCAAGCCCGCGGCTCGCAGTTAGTTAGGACTTTGATTTTTTCC
TTCTCTTCCCTAGTGTCTGATTAGTGAGGGAGTTTGAATATCTTTTTCATAGTGTTTGAG
TAGTGAGGGATGAGTGAGAATCGGAAATAAATGAGGATGATATGATTTTGATCGCGTCGC
CGTGTAAGTTCCATACGAAGATCCGATGAACTTGAAATCAATAGAGTGCTGTCGAAATTC
AGTCT

Homology of Contig TA51976_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g53790.1	645	1e-73	protein\|periplasmic beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g08580.1	651	2e-79
Arabidopsis v10	AT5G20950.1	624	1e-53	Glycosyl hydrolase family protein \| chr5:7107609-7110775 REVERSE LENGTH=624