barSeed - Barley Seed Development Database

Probe CUST_18299_PI390587928

Source Contig U35_3323

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18299_PI390587928	Hv_44K_v2	TGAAATGCGCGCTAATACAGTGATAATTATCCATGGAGCATTTCCGTTTCAGAGAAAAAA	2007	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.282	1.539	1.113	0.926	0.330	0.397
Raw	172.854	327.154	204.161	268.985	35.165	43.766

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67041.1	2312	9e-22	210 - 264	100	55 / 55	minus	ABC06225 ABC09588 ABC18098
JLOC1	JLOC1_44224.1	757	5e-22	364 - 418	100	55 / 55	minus
JLOC1	JLOC1_44225.3	2614	5e-22	2048 - 2102	100	55 / 55	plus
JLOC1	JLOC1_44225.2	2608	5e-22	2042 - 2096	100	55 / 55	plus
JLOC1	JLOC1_44225.1	2596	5e-22	2030 - 2084	100	55 / 55	plus
Harvest21	ABC09588	1295	3e-25	3 - 62	100	60 / 60	minus	ABC09588
Harvest35	U35_3323	2069	3e-25	2008 - 2067	100	60 / 60	plus

Contig Sequence (2069 bp)

>U35_3323 2069 Hv_44K_v2
TCCCCTCCCTCTTGAGCCTCCGAGTTTGCCTTCTCCCACACGCTCACCTTCTCTCCTCCC
CCCTCCTCTGCGCGAGAGCGTCGCGTCCAAACCCTCCCCCCAGCGCCCGCCATGGCGAGG
CCGCAGCAGGAGGCGATCGACACCTTCATCAGCATCACCGGGGCCGACGAGGCCGTCGCC
ATCCGCAAACTCGAGGAACATGCTGGTGACCTTAATCAGGCAGTCAATGCACACTTCACT
GAAGGAGATAGCACAGTGAACGCAATCAATCACAGTATTCCACCTGTTAATCATGATGAT
ATGGAGCTGGACGGACCACTTGATAACACATTTCAAAGGCCGTTGTTCCCCGAAGCTCTG
CACAGCCCTTTTGCACTAATGGATCCTAATTTCCAGCAAGCGTTTTTTGATAGTGTTGGC
TCTGCTGGTACTCCCAATCGTGATGCACAAGGTCCACACCCTAGAGAGGCATCTAATGAC
TTTAATGACAACAACATTCAAATAGGTCCCTCTGGTCAGTCTTCTGTTGTTGAGAATGTC
ACTGGACACGGGTCTTCGTATGGACCAGACGTTCGTGACACCATCATAATTGATGATGAT
GAGGAGGAGTTATCATTTGGGCTGCCTTCTCGGCATGCTAGTATCCGTAGCAATGCATCG
CAGCCAAACCCTCTGCCAACTGCTCCTCCACTGGTTCATGTCACAGACAATGAGATAGAA
GAGGAAATGATCCGGGCTGCAATTGAAGCTTCAAAAAGAGAGGCTGAAGAACTGGCAAAT
ACAGCAGAGCAAGAACGGACTCAACACATGGGTGGAATAAACCTGGAAGATCATTTATCT
GATGAAGACATGGAAACTACAGCTGGAATAGTGAGAAGGCAAGAATTAGGTAGAGGGAGG
GGTGGAACAACTATGCAGCCAGCAGATGAAGAGAGCTCAGATGAGGACACCGAGGATGTT
GAAGAAGCACCGTTAGTTAGACGTCGTTCTAGGCGCATCCCTCCTGGAGACACAGAGTCA
GCAGAACCTGTTCTCCCAGGTGACAGTCCTCCCTCAAGTTCGCAGCCTCAAAACCATGAT
CACCAGTACAACAGAACCGATTTCCCATCGGAGTGGGGTGGCATTTCTTCTGAGGAACAT
GATGAAGCTGTTATGCTTGAGGCTGCAATGTTTGGTGGAATTCCTGAAGCACCAACATAT
CCATTATCCATTCCATCTCATGCGAGCTCAGGTCATTATCCCCAAGTAGTGCACTCTCCA
CCACCAGAATTGACTGAACAACGGTTATTACGAGAGCAGCAGGATGATGAGTACCTTGCA
TCACTCCAAGCTGATCAAGAAAAGGAAATGAAGACTCTACAAGAAGCTGAGCTCCGACTG
CTGGAAGAAACTGCTGCAAAAGAAGCTGCTCTTGAGAAGCAAAAGCAAGAGGAGGAGGAA
CGGCGTAAAAAGGAACTTGAGAAAGAGGAGCTTGAGGCCAGTCTTGCTGCCAAAGAAGCA
TCATTGCCAATGGAGCCACCTTCAGACAAGGAAGGAGTTATAACACTCGTAGTTCGCATG
CCTGACGGTAATCGACAGGGGCGTCGCTTTTTAAAATCTGATAAATTCAAGTCCCTTTTT
GATTTCTTAGACGTTGGCAGGACCTGCAGGCCAGAAACCTACAGACTGGTAAGGACTTAC
CCCAGGCGTGCTTTTACCACTGCTGACGGCGACCAATCATTTACTGATCTTGGGTTAACG
AGCAAGCAGGAAGCCTTATTTATAGAGCAGATTACTGATTAGGGGAAAGGATTCAGACAG
GCCTAGGGATACCAACTGATACTGAGAGTTGGGGTTTTACATGTCTATACTTGCATATGG
TTTTTACCAAGGAATCTAAAATTGGTTTGTGTCGAAGAGGTCAAACTGTGTTCTTTTGCG
ATGCGGAAAGGCGCATGACTTGACTTTTATGCAGTGGACATATCAGGGTAAAACAGTGAT
GAACAATTGGTTCAGAATATTTAGTTATGAAATGCGCGCTAATACAGTGATAATTATCCA
TGGAGCATTTCCGTTTCAGAGAAAAAAAA

Homology of Contig U35_3323 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g35710.1	565	0.0	protein\|UBX domain-containing protein, putative, expressed
Brachypodium v1_2	Bradi4g35720.1	558	0.0
Arabidopsis v10	None