barSeed - Barley Seed Development Database

Probe CUST_18297_PI390587928

Source Contig U35_3325

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18297_PI390587928	Hv_44K_v2	TTATGCTAGTAAATGTACACTACCATCGTGCTTTCCATTGAATCATGTCCATCCAAAAAA	1147	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.065	1.654	1.110	0.885	0.495	0.628
Raw	242.560	305.981	178.353	220.827	43.112	60.672

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_45530.1	2261	6e-21	1660 - 1715	98	55 / 56	minus
JLOC1	JLOC1_45529.1	2929	6e-21	860 - 915	98	55 / 56	plus
Harvest21	ABC09626	1198	3e-25	1128 - 1187	100	60 / 60	plus	ABC09626
Harvest35	U35_3325	1218	3e-25	1148 - 1207	100	60 / 60	plus

Contig Sequence (1218 bp)

>U35_3325 1218 Hv_44K_v2
AACCCCCTTCTCTTCCGGCCTCCCATCTCCCATCCCCTCTCCTCTCCTCGCCGCGTAGCC
CCTCCCAAATCCGCTCCTCCGCCGGCTCGCTCCTTCTTCCGGGAGAGGGGCAGCGAGGAC
GAAGATGTCGTCCCTGCGGAACTCGATCCCGCGGCGGGCTCACAAGGAGCGCGCCCAGCC
GGAGTCGCGGAAGAAGTACGGGCTTCTGGAGAAGCACAAGGACCATATCGTCCGCGCCAC
GGCCTACCACCGCAAGGAGGACTTCATCAGGAACCTGAAGGAGAAGGCATCATTCAAGAA
CCCAGATGAGTTCTATTTCAAGATGATCAACAGTAAAACCGTGGATGGAATCCATAGGCC
CAAGCCTGAAGCAAACAATAAGTACACCGAAGAGGAACGTATGCTGTTGAAGCATAAGGA
CATGGGATACATCTTTCAGGCTGTCCAAAGTGAAAGAAAGAAAGTTGAACGATTGAGCTC
AACCCTTCACGCGGTGGATGAAAAGCGTTCAAACAAGCACATTTACTTCGCGGAAGACAG
AGAAGAAGCCAAAGAAATACGATCTAGGATAGGTCAAAGCAGCAGCACACCTCAATTTGG
CAACATCCCTTCTCGTATAAAGAGGAAAACAGCTTCGTCCTACAAGGAGTTGGAAAGCAG
GAAAGAAAGGGTTAAGAATCTTGAGAAATTGTATGCGGACATGGCCTTGCAAAAAGAGCT
AAAGAAACCTGGACGCAAAAGGAAGCTCCGTGAAGAAGAGATGGTAAATTCAGTAAAACA
GCCTGTTTACAAGTGGCGTGCGCAAAGAAAGCGATGATAGGAATGAAGAAAGCTGGCTCT
TCAAGAGTTTCACTTCCCTGTGACATTGCCCAACACCCCATCCATTGCTTTCAAATATCT
TTATAACCTTTTGCCTGGTGATATTTGCGGATATTGTGCCGGAGACAATGTACTGCTATT
AGTCTATTACCATATGTTAATTTCTCGACATGTCAAGTGATCAGAGTTACCATGTAAGGA
CGATTTTGATGGATATAGTTGAAATCGTGCCTGTGTTGTGTATCAAGATATTTGTGATAG
AAAGCTAGTTTATTTGCATTCCACGATTAGAAAGCAGAGTCAAATTGTCAGAGTTGCCTT
GTATTTTTTATGCTAGTAAATGTACACTACCATCGTGCTTTCCATTGAATCATGTCCATC
CAAAAAAAAAAAAAAAAA

Homology of Contig U35_3325 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g59500.1	230	3e-125	protein\|U3 small nucleolar RNA-associated protein 11, putative, expressed
Brachypodium v1_2	Bradi2g52910.1	229	8e-131
Arabidopsis v10	AT3G60360.1	228	2e-92	\| Symbols: EDA14, UTP11 \| embryo sac development arrest 14 \| chr3:22312477-22314002 REVERSE LENGTH=228