barSeed - Barley Seed Development Database

Probe CUST_18296_PI390587928

Source Contig U35_3326

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18296_PI390587928	Hv_44K_v2	TATTTCAAGTAAACACAAACTCATCCGCGGTTCCACTGATCGATGTTTCCTTCTTCACGC	1082	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.302	5.702	1.240	0.546	0.677	0.443
Raw	104.355	139.111	23.882	17.972	5.515	3.924

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10028.5	1239	2e-24	1180 - 1239	100	60 / 60	plus	ABC07530
MLOC	MLOC_10028.4	1164	2e-24	1057 - 1116	100	60 / 60	plus	ABC07530
MLOC	MLOC_10028.3	1261	2e-24	1168 - 1227	100	60 / 60	plus	ABC07530
MLOC	MLOC_10028.1	1399	2e-24	1292 - 1351	100	60 / 60	plus	ABC07530
JLOC1	JLOC1_6535.2	1254	8e-25	1104 - 1163	100	60 / 60	plus
JLOC1	JLOC1_6535.1	1361	8e-25	1211 - 1270	100	60 / 60	plus
Harvest21	ABC07532	724	3e-25	36 - 95	100	60 / 60	minus
Harvest21	ABC07530	1216	3e-25	1075 - 1134	100	60 / 60	plus	ABC07530
Harvest35	U35_3326	1224	3e-25	1083 - 1142	100	60 / 60	plus

Contig Sequence (1224 bp)

>U35_3326 1224 Hv_44K_v2
GAGGAAACCCACCGCGAAGCCACCCCAACAAAGCGTCCCCGTCCGTCGACAGCGCGGAGG
ACCCGACGCCGACGCCGGGAGCCATGGCCCTCCTGCCACTTGTGGGCTTTCCCTCCTTCC
CGTTCCCGGCCTGCCCATCCAGGAGAACATGTGGCCCTGCTCCGCGCATCAACTTCAGAT
GCTGCGTGCAAGAGAGAGTGCCGGCGGTGAGGAACGACGGGATATCCAAGCATTTGCTCT
CCTGCCTCGCTGCTTCCCTCGTCTTCATCTCTACACCTAGCCAGGCTGTTCCTGCAGACA
CCTTTGCCCGGCCGAGCTTGTGCCAGGTTGCGGTGGTGGCCGCCATCGACAAAGCCGCTG
TTCCTTTGAAATTCGACGGCCCTTCTGACGATGGGATGATGATGATGACCAAGGGTATGA
CTGCCAAGAACTTCGATCCTGTTCGCTACTCCGGTAGGTGGTTCGAGGTAGCATCGCTCA
AACGCGGGTTTGCTGGTCAGGGACAAGAAGACTGCCATTGTACTCAGGGAGTGTATACAT
TTGATGAGAAGGCGGGCGCGATCAAGGTGGAGACATTCTGTGTCCATGGCTCACCCGATG
GATACATCACCGGTATCCGGGGGAAGGTGCAATGCCTGTCTCAAGAGGACATGGCTAGTG
CCGAGACTGATCTCGAGAAGGAGGAGATGATCAGCAGCAAGTGCTTTCTGCGATTCCCGA
CACTCCCGTTCATACCCAAGCTACCCTATGATGTCCTAGCAACTGACTATGACAATTACG
CCGTCGTGTCTGGAGCGAAGGACACAAGCTTTATTCAGATATACTCAAGAACACCAAATC
CCGGACCGGAGTTCATCGAGAAGTACAAGTCATATGCTGCCGGCTTCGGCTACGACCCGA
GCAAGATCAAGGACACGCCGCAGGACTGCGAGGTGTCCTCGGACCAGCTAGCGCAGATGA
TGTCTATGCCCGGGATGGACGAGGCCCTGACAAACCAGTTCCCGGACCTGAAGCTCAAGT
CGTCGGTCGCGTTCGACCCGTTCACGAGCGTGACCCAGACCCTGAAGAAGCTCGCCGAAG
TGTATTTCAAGTAAACACAAACTCATCCGCGGTTCCACTGATCGATGTTTCCTTCTTCAC
GCCGAAGCTGCACTTTTTTTGATAAATAAAAATACCCAAATGCTAGAAAGTGTTGATTCG
TACACACAAAAAAAAAAAAAAAAA

Homology of Contig U35_3326 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g53490.1	343	3e-172	protein\|OsCHL Chloroplastic lipocalin, expressed
Brachypodium v1_2	Bradi5g22510.1	395	0.0
Arabidopsis v10	AT3G47860.1	353	1e-133	\| Symbols: CHL \| chloroplastic lipocalin \| chr3:17656778-17658269 REVERSE LENGTH=353