barSeed - Barley Seed Development Database

Probe CUST_18295_PI390587928

Source Contig U35_3327

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18295_PI390587928	Hv_44K_v2	GAGTAAAATGGATGAATCTACCTTCTAAAGTATGTATATGCATATGCCAGGAAGTTGTAC	1406	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.709	1.963	1.217	0.826	0.382	0.352
Raw	43.502	77.218	41.694	45.940	6.857	6.866

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_3679.4	1247	8e-25	1150 - 1209	100	60 / 60	plus
JLOC1	JLOC1_3679.3	1264	8e-25	1167 - 1226	100	60 / 60	plus
JLOC1	JLOC1_3679.2	2688	8e-25	2591 - 2650	100	60 / 60	plus
JLOC1	JLOC1_3679.1	2816	8e-25	2719 - 2778	100	60 / 60	plus
Harvest35	U35_3327	1485	3e-25	1407 - 1466	100	60 / 60	plus

Contig Sequence (1485 bp)

>U35_3327 1485 Hv_44K_v2
CCTCAGTCATCTAAGAGAGATGGATAATGAGGTAAAGAGCTTTCTCCTCATCAACATGTT
CCTTGAAGTAGCATGGTGCCTTCATGCAATTGACGTTGAAAACCCATCTGAAACATCTAT
CGATGGACTTCAATCCAAGCAAAAAGCTCTCTTTGAACAGCTCTATTATTTCTTGGTGGT
TCTGTCCAATTATCAGAAAGAGGGAAGGAGCACCACTGTGCTTTCCTGCAGAGTCTGCAT
CATTACTGCAGAGATGTGGTGCTTGTTTAAGAAGTCGAAGTATTCTTCAACAAAGCTAAA
AAATTTGGGTTATCTCCCACAATTAGATGTTGTTCAGAAGTTTTGGAAACTATGTGAACA
GCAGCTGAACATATCAGATGACACAGAAGATGAAGATGCAAATGAAGAATATATTGAAGA
CACAAACAGGGATGCTGTCATGATTGCAGCTGCAAAGCTACTTCTTGCTGATACAGTTTC
AAAGGATTACCTTGGCCCTGAGATTGTTTCACACTATGTATCTCATGGTGCAAGTACGAC
AGAGATCATCAAGCATCTCATTACCGCACTAAAGAAAAATGCAAACAGCGATATAGCTGC
TCTCTTCTTTGAGGCATTGAGACGGTCTGACAGATGTACAGAAGAGGGCACAAGATACCA
ATATGAATGAAGATCCAAGTGTTTGGCGTGCATACTTAACCTTTGTAGAACACTTACGTG
AGAAGCATGCAAGGAATGAGGTTTTCCACGAAGAAAAGGAGGAAAAGCCTGTAAAGCGCA
GGGGCCGCCCGAGGAAGCCTAGAGATGAACCTGTGAGGAACCTTTTTGATGGAAACAAAT
CTAGTGATGAAGAGTCTGTTAGTGGCTCTGACCAACGGGGGCATGGTGGAGATGATGACG
ACGAGGACGATGCTTTTGACCAGCCTTTGATCAACACGTTTAGGCCTTCTGCATCCAAGC
TAAGATCGCTGAAGGGGGTTTCTCAACAGGGAACAAGCAGCCAGAGAAATGCTCCTACGG
CTTCAGGAAGCAATAGTTGATGAGGTATGCACTAAGTCAGTCCTGTGGATCACGCATGAC
GCATTAAGGCTCTAGTCGATTCAGCGGACGAGGAGTTGCCGTGGTCAACTCGTCACTCAT
GCGGAACAACGAACGACTTTCGCCTGCTGTTGAATGTTTTTGTTTAATTGTCTAGGTGTC
ATAGATGGTTGTACTTAGGTGCTCACCCCCTTCTACCATGTGCTTCCCCACTGTATATGG
TTGTAACATTTGCAAGGGCTGAAGTTTCATTTCCTTGGCGTGGGTCATTTCATACATATG
TACTCCGGAAGTGCCTTGAGCTATTTGCTGGTAATGAATGAGTTTAATCAAATTCCTAAA
TTAAAAAAAAAAATTTTTACTAGAGGGAGTAAAATGGATGAATCTACCTTCTAAAGTATG
TATATGCATATGCCAGGAAGTTGTACTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3327 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g09620.2	979	8e-109	protein\|SCC3, putative, expressed
Brachypodium v1_2	Bradi4g11510.2	900	1e-119
Arabidopsis v10	AT2G47980.1	1098	6e-56	\| Symbols: SCC3, ATSCC3 \| sister-chromatid cohesion protein 3 \| chr2:19631423-19636795 FORWARD LENGTH=1098