barSeed - Barley Seed Development Database

Probe CUST_18294_PI390587928

Source Contig U35_3328

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18294_PI390587928	Hv_44K_v2	TGGGTGGAGATGGAGATGGTTTTGCTTGTTTATTAAGATCAAATTAGGGCAATAAATACA	1826	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.077	1.230	1.261	0.988	0.416	0.450
Raw	2585.600	4600.053	4132.367	5039.537	765.552	883.137

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369142	2628	7e-23	2553 - 2612	98	59 / 60	plus	ABC03642
MLOC	MLOC_81450.1	1986	7e-23	665 - 724	98	59 / 60	minus	ABC03642
JLOC1	JLOC1_54178.1	1990	4e-23	1267 - 1326	98	59 / 60	plus
Harvest21	ABC03642	2144	5e-23	1827 - 1882	100	56 / 56	plus	ABC03642
Harvest35	U35_3328	1915	3e-25	1827 - 1886	100	60 / 60	plus

Contig Sequence (1915 bp)

>U35_3328 1915 Hv_44K_v2
AAGGAGAGCCGCTCCGCCGACGCCGCCGTCCTCGAGGAGCAGGTCCAGCGTCGCCTCCCC
TGCATCCTCCCTACAGAATTCGCTGGGGAACAAGCAGGTGATGGAGGTGCATATAACCGA
AGATGTTTACCTAAATTCTGCATGTTGTCGGGGTGATGATAAACTCGCCTACATGGCTAC
ATGTGCACGTGAGACATCATCTAGGCCCTTGTTAAGATTATTCTTGTTGAGGAGGAGGAG
GAGGAGGAAGCGAGGTGTCGAGTTGCTTGTGGTTGGGCGGCGAGCGGAGAGCCGCGAGTT
GCCGCTGACGGCCGACATATCGGACTGGAGCGAGCACTTGAAGCTGTGGGTTCTCGGGGA
CCTGCTCACGTCCGTCGACTTTGGATCCCGGTTGTCCATGCTGGTGGTGCAGCAGCAGAC
CAAGGCGGCCGCTCGAATGAGGTTGTCATAGCCTTCCTCCTCCTTCGCCCTGACAACCAC
CAGGTGGGCGTGAATTTGATCATCACTACTACAACATGACAGAGGATACGATCTGCTGAG
GAGGGTCAAGGAAGATGAGAGCAGGAGGGATGAGAATCTTAAGTACAACTGCAAGTGTTC
TTTCCTGGAGATCTATAATGAACAAATTACAGATCTTCTTGACCCGTCATCCACAAATCT
TCAATCACATCATAACACTTTTGGCGAGGTCGCGGTCCATGCCGCTGGGCTGCCACGACG
TCGTGCCCCGGGCCATGCCGCTGTTCCACCAGACCATGAAGGAGCACGGTAAAATGTCTA
TCACTTGGTTTGGACCGTCACCTAGAGTGACCATTAGCAAGCCTGAACTTGTGCGCGAAG
TTCTGTCCAACAAGTCCGGCCACTTTGAGAAGCTCAAGTTGGGCCGTCTTCAGAGGATGT
TGCACAACGGCATTGGTAGCCACGAGCGCTAGAAATGGGCCAAGCACAGGAAGATCATCA
ACCCTATGTTCCATCTCGAGAAGCTCAAGCGCATGTTGACAGCTTTCGCTGCATGTTGCA
CGGACCTGGTGCAGAGATGAGAAGGCCTAGCCGCAGGTGATGCGCCATGCGAGGTAGATG
TGTGGCCCGACATGCAGAACCTGACAGGGGATGTCATCTCTCGCGCTGCGTTCGGTAGCA
GCTACCTGGAGGGCAGGAGGATCTTCCAGCTTCAAGGGGAGCAAATCGAGCTCGCCGTGC
TCGCCATGAACAAGATACATATCCCTGGTTATTTGTTCTGGCCTACAAAAGCCAACCGAA
GGATGAGACAGATTGCTGCCAAGATCGAGAGGATCCTCAAGGGCATCATCGCGAAAAGAG
AGAACGCCTTGATGGCCGGCTAAGCCACAAGCGACGATCTCCTCGGGCTGCTGCTGGAGT
CCAACATGGCACACAGCAGGGAGGGCGGCAACTCCAAGGCCGGCATCACGACCGACGACG
TGATCGGAGAGTGCAAGCTCTTCTACTTCGTCGGCATGGAGACCACGTCGGTGCTGCTCA
CATGGACGATGATCGTCCTCTGCATGCACCCAGAGTGGCAGGACCGCGCCAGGGAGGAGG
TCCTGCAAGTCTTCGGCGACCGCACGCCGGATTACGACGGGTTAAGTCGCCTGAGGATTG
TGACCATGGTGCTGTACGAGGTGCTGCGGCTGTACACGCCGCTGACGGCGCTCCAGCGCA
AGACGTACAAGAATTTCCAACCAATAATAAGACCATAGTTTTCAGTGCTTGTACAATGGA
AAGGGACAGTCACGAGATGAGTGCAGATTACATATGAGCAATTAACTTTCTATTTATTCT
TGTAAGCATGTGATGAGTGCAGATTATGGGTGGAGATGGAGATGGTTTTGCTTGTTTATT
AAGATCAAATTAGGGCAATAAATACATCCAATTCAGATCAAAAAAAAAAAAAAAA

Homology of Contig U35_3328 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g43844.1	532	0.0	protein\|cytochrome P450 72A1, putative, expressed
Brachypodium v1_2	Bradi2g44300.1	528	0.0
Arabidopsis v10	AT3G14680.1	512	7e-108	\| Symbols: CYP72A14 \| cytochrome P450, family 72, subfamily A, polypeptide 14 \| chr3:4934478-4936462 FORWARD LENGTH=512