barSeed - Barley Seed Development Database

Probe CUST_18291_PI390587928

Source Contig U35_3331

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18291_PI390587928	Hv_44K_v2	TGTCCAGGTCTGTTCGCTGTACATTATTGGGCAGATATAATTGATGCTTTGTTCTGTAAA	1156	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.746	1.622	1.110	1.067	0.383	0.286
Raw	281.854	413.596	248.924	367.088	47.801	38.378

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_24904.1	746	2e-23	530 - 587	100	58 / 58	plus	ABC10509
JLOC1	JLOC1_17088.1	545	1e-23	470 - 527	100	58 / 58	plus
Harvest21	ABC10509	1034	4e-24	976 - 1033	100	58 / 58	plus	ABC10509
Harvest35	U35_3331	1230	3e-25	1157 - 1216	100	60 / 60	plus

Contig Sequence (1230 bp)

>U35_3331 1230 Hv_44K_v2
GTACGAGATCTCCCAAATTTCTCAGCTCCAGCGGAAAACCCAACATCCCACTCCTCCGAC
CCCCTCGCATCCCTGTCGGAATCGCGCATCCGGAGCTCGCCGCCCTCGCCATGGCGCAAG
GTACCGCGCCCCCCGCGGCCGGCGGAGGCGGCGGGGGTGTTTTCTCTACCCCGGCGGCGG
TTGCGACGACTCCTCCGGGCACCCCCCGCGCGGCGGCGCCGCCGCCGCCGCTCCCCTCCG
GGCACTACGCGGTAGAGCTCTACTTCGATCCCGCGCTGGAGAACCAGGTGCTCAAGGCGT
GGAACGCCCTCGCGCGGCGGCAGCTCAGCAGCCGCCTCATCGACACCGCGTCCCGCCCCC
ACCTCCCGCTGCTGCATCTCCCGGCCGCCGCGCTCCCCGACCCGCTCCGCCTCGCGCCCG
CCCTCCGCGCGCTTGCCTCGCGCATCGACCCGCTCCCTCTCGCGCTCTCGTCGCTCGCAT
CGCCCCCGTCATCCCTTGATGCGGGGGTCCTCTTCCTTTCGCCCACGCCGTCCGCGGCGC
TGCTCGGCCTCCACGCGCAGCTCTGCGAGCTGCTGCGCAAGGACACGGGGCTCGAGGTGC
CCGACGGGTTCCGCCCCGACAACTGGGTCCCGCGGTGCGCCGTCGCCGTCGATGTGCCGC
GTGGCCGTATGGCCGAGGCTTTTTGCGTGCTCCGTGAGCTCAAGCTTCTGCCTGTCTCCG
GGTATGGTATGGACATTGCGCTTGTAGAAGTCGCGCCGGTGGTCAGAGAGGTCGTGTCGT
ACCCGCTTGGTGGCAGCGGCGGTGTTGGAGCCGATTGAGAGGTGTTGTTGTAATTTGTAC
AATGTGAAGAACCTCCTAGATGGGACTATCATATTTAACAAGGGCATCATAATGATAACA
TGGGCATCTCCTTGTCCAGTTTGCCCGATTGGTAAGAAGCTAAGTTGGAAAAAGAAGGGT
AGATCATACTGTATCCTACCGCATATACAGTATTTTCTTATTTTTAATTGTTTAATCTTT
TGGTTGATAATATCCCCCTACTCAGCTGTAGAGACTTCACAAACTGAAACTGTTACCCGT
GTTAAGTTTATGTAATGAATGGTCGGTTATTGTGCGCATCGAGTTGAGATTACTTGTGCT
CTTGTCGTTTTCTTGGTGTCCAGGTCTGTTCGCTGTACATTATTGGGCAGATATAATTGA
TGCTTTGTTCTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3331 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g20860.1	237	5e-73	protein\|calmodulin-binding protein, putative, expressed
Brachypodium v1_2	Bradi4g29280.1	237	4e-78
Arabidopsis v10	None