barSeed - Barley Seed Development Database

Probe CUST_18289_PI390587928

Source Contig U35_3333

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18289_PI390587928	Hv_44K_v2	TGTTGACAGTAAGCATTTCTTTGGAGTGTTAACTGCTCTGCTAGTCCTGCCCACAGTATG	894	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20163.3	1949	2e-24	941 - 1000	100	60 / 60	plus	ABC08340
MLOC	MLOC_20163.4	1865	2e-24	941 - 1000	100	60 / 60	plus	ABC08340
MLOC	MLOC_20163.5	1864	2e-24	941 - 1000	100	60 / 60	plus	ABC08340
MLOC	MLOC_20163.6	1857	2e-24	929 - 988	100	60 / 60	plus	ABC08340
MLOC	MLOC_20163.2	1925	2e-24	942 - 1001	100	60 / 60	plus	ABC08340
MLOC	MLOC_20163.1	1633	2e-24	961 - 1020	100	60 / 60	plus	ABC08340
JLOC1	JLOC1_13986.1	2142	8e-25	929 - 988	100	60 / 60	plus
Harvest21	ABC08339	1511	3e-25	895 - 954	100	60 / 60	plus
Harvest35	U35_3333	1511	3e-25	895 - 954	100	60 / 60	plus

Contig Sequence (1511 bp)

>U35_3333 1511 Hv_44K_v2
GCATCCATCTCCTCTGGAAGCGTCGCGTCTGGTCCCCTCCTACTCAAACCCGCCACGCAA
CCCGGCATTTCCGCCACTTGTGGTGCCGCGCGGCGGGATGGCGGCGGCGGCGGCGGCGGG
GAGGCACCGGAAGGAGGAGGAGGACGAGATGCTGCTGGACGACGGCGACATCGAGGAGAG
CCCCCGCGACAGCTTCCGCGACTCCGACGACGATGACGGCGAGGAGGAGGAGGAGGAGGA
GGAGCGGGGCGAGGACGGCGATGGGGTCGGCTCCTTCGAGTCGCGCCAGTGGCCGCAGAG
TTACCGGGAAACAACTGACACCTACACAATTGCTGCGTCTCCCATCTTCGGTTACCTTGG
TCCTTCCACGAGCAAATACTCTATCGATGGTGGCCGCAGTGGCGTGGCTTCTGACCTCAA
GTTGCCTTTCATCTCGGATAGGCTAGAATCTGTCAAGAGCCTGCGGCGACACCTTCTTGG
TTCAGTTAGAGATGAGAAGCTCTCATTCCAGTATACTGGAGAGATCTACGTCGGTCAAGG
GTGCAGTGTAACACAGACGGTCTTCAATGGTATTAACGTACTCGCTGGTGTTGGCCTTCT
TTCCACTCCGTTCACGATTCATCAAGCTGGATGGGCTGGTCTTGCAGTTCTGTCTGTTTT
TGCAATTATTTGCTGTTATACTGGAGTTCTTCTCAAACACTGTTTCGAGAGCAAAGACGG
TATTGCAACCTATCCAGACATCGGGGAGGCCGCCTTTGGAAGAATTGGTCGCTTGATCAT
ATCTATTATTTTGTATACCGAGTTATATTCATATTGTGTGGAATTCATTATACTGGAAGG
TGATAATATGACATCAATCTTTCCTGGCGTCAATCTTAATTTGTTTGGGATTCATGTTGA
CAGTAAGCATTTCTTTGGAGTGTTAACTGCTCTGCTAGTCCTGCCCACAGTATGGCTGCG
AGATCTTCGAGTGCTATCATACCTTTCAGCGGGTGGTGTGATAGCAACTCTTGTGGTTTT
TATATCTGTCGCTTTAGTCGGCACTACTGAAGGTGTAGGGTTCCATCAGACCGGGGAAGC
AGTAAAGTGGAGTGGCATGCCCTTTGCTATCGGTATTTACGGTTTCTGCTACTCCGGGCA
TTCGGTATTTCCGAATATCTACCAATCAATGTCTGATCGCACGAAATTCCCTAAGGCACT
CTTTATATGCAATATATGGCTCGTTTGCTATTATTGGCTATCTGATGTTTGGTGACAAGA
CAATGTCCCAAATAACTTTGAATCTTCCAAAAGAGTCATTTGCCTCAAAAGTTGCTCTGT
GGACCACGGTTATCAACCCTTTCACCAAATTTGCCTTGTTGTTAAACCCATTGGCTCGGA
GTTTAGAAGAGTTGCGCCCTGAAGGATTTTTGAACGAAACAATTGTCTCTATTATACTGA
GGACGAGCCTTGTGGCATCAACTGTTGNCATTGCATTTCTTCTCCATTCTTCGGTTNGGN
GATGGCTCTGA

Homology of Contig U35_3333 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g54730.1	549	5e-173	protein\|transmembrane amino acid transporter protein, putative, expressed
Brachypodium v1_2	Bradi3g53740.1	537	0.0
Arabidopsis v10	AT2G41190.1	536	2e-128	Transmembrane amino acid transporter family protein \| chr2:17167561-17170145 REVERSE LENGTH=536