barSeed - Barley Seed Development Database

Probe CUST_18288_PI390587928

Source Contig U35_3334

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18288_PI390587928	Hv_44K_v2	TCTCTAGCAACAATGCACTACTGTTACCATTTAGCTGCTGCTATACCATTTGGTGTACTC	1000	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.508	1.541	1.162	0.836	0.293	0.383
Raw	617.294	989.238	633.657	743.999	88.126	126.804

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_13986.1	2142	8e-25	1961 - 2020	100	60 / 60	plus
Harvest21	ABC08340	1060	3e-25	1 - 60	100	60 / 60	minus	ABC08340
Harvest35	U35_3334	1060	3e-25	1001 - 1060	100	60 / 60	plus

Contig Sequence (1060 bp)

>U35_3334 1060 Hv_44K_v2
AGGCTCTGCTAGTCCTGCCCACAGTATGGCTGCGAGATCTTCGAGTGCTATCATACCTTT
CAGCGGGTGGTGTGATAGCAACTCTTGTGGTTTTTATATCTGTCGCTTTAGTCGGCACTA
CTGAAGGTGTAGGGTTCCATCAGACCGGGGAAGCAGTAAAGTGGAGTGGCATGCCCTTTG
CTATCGGTATTTACGGTTTCTGCTACTCCGGGCATTCGGTATTTCCGAATATCTACCAAT
CAATGTCTGATCGCACGAAATTCCCTAAGGCACTCTTTATATGCTTCGTAATTTGCACAG
CAATATATGGCTCGTTTGCTATTATTGGCTATCTGATGTTTGGTGACAAGACAATGTCCC
AAATAACTTTGAATCTTCCAAAAGAGTCATTTGCCTCAAAAGTTGCTCTGTGGACCACGG
TTATCAACCCTTTCACCAAATTTGCCTTGTTGTTAAACCCATTGGCTCGGAGTTTAGAAG
AGTTGCGCCCTGAAGGATTTTTGAACGAAACAATTGTCTCTATTATACTGAGGACGAGCC
TTGTGGCATCAACTGTTGTCATTGCATTTCTTCTTCCATTCTTCGGTTTGGTGATGGCTC
TGATTGGATCCCTGCTCAGTATACTTGTGGCTGTCATAATGCCCGCCTTGTGCTTCTTGA
AGATCGCACAGAATAAAGCCACACGCACGCAGGTGATTGCAAGCGTCGCTATAATAGTTG
TCGGAGTCGTCAGTGCCGCCCTTGGAACCTACTCCTCTGTGGCCAGCATAATCGGATACT
ACTGATTCTTCCAAGGCAATCTCTTAGACGGCTCTCGGCGCCGTCACTCTTGCCAAGAGT
TTTTGCTGTGTATCATCGAATTTTACCGTGCTCTATGTACATCCTTCGACCTAGTATAGT
CGATTTATAAAGACAGCATCTCTAGCAACAATGCACTACTGTTACCGTTTAGCTGCTGCT
ATATCATTCGACCTAGTATGGTCGATTTATAAAGACTGCATCTCTAGCAACAATGCACTA
CTGTTACCATTTAGCTGCTGCTATACCATTTGGTGTACTC

Homology of Contig U35_3334 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g54730.1	549	2e-141	protein\|transmembrane amino acid transporter protein, putative, expressed
Brachypodium v1_2	Bradi3g53740.1	537	5e-154
Arabidopsis v10	AT2G41190.1	536	2e-118	Transmembrane amino acid transporter family protein \| chr2:17167561-17170145 REVERSE LENGTH=536