barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_18285_PI390587928Hv_44K_v2GTGACACACTCTCTTTAGGAGTGAGCGCGTTAATTCAGTGTTCCTTGGTTTGTTTGCAAA649GeneList: turquoise
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.2531.4291.1320.9290.4340.361
Raw 1150.6892045.7071413.6201813.407299.246272.044



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_24801.121315e-222011 - 206510055 / 55plus
Harvest35U35_33377233e-25650 - 70910060 / 60plus



Contig Sequence (723 bp)

>U35_3337 723 Hv_44K_v2
CCATTCAGGCCCTCCCCTCCCTTCGTTTCGACCGCGACCTCCTCCGAATCCACAGGCCGG
CGGCGACCTCCTCTTCCTCCGCCCCTTCCCCCGGCGACCCTAACCTCCCCGGCTAATATG
GATTCAGAGCCCTCATCGCAGAACCCAACAGACATGACAGCATTTGTGCAAAACCTCCTC
GGTCAGATGCAAACAAGGTTTGAGTCTATGTCCCAGAACATCGTGTCAAAGATAGATGAA
ATGGGAACCAAGATCGACGAGCTGGAGCAGAGCGTCAACGATCTCAAAGCTGAGATGGGC
ACCACCGACGTACCTGTCAAGAAGCCCGACGAGGCAAAGCCTGCCGAATCCGCGTAACTC
AGATGTAGGCATATGAGATTTGGTTGTAAAGACTTGGTGGCTATCTGACAGAAGTTTCGG
CATTCATGTGTATCTGATGATGTTTTCCCATGGACCATAGCTCTTGTACTACCGAGTGTG
CTACCTATTGCTGTCACTGGAGCTTCAGGTCTCCAGACTTCCAGAGCCCAGACACCATTA
TCAGTTGATAGGTTGTTTCCCTATGAAAAAAAAAAAAAAAGTTGGTTTGTCTGTTCATAG
CTGTTGCTGCAATAGCCAGACGATGTTTCGACCGCTATGCAATTTTTATGTGACACACTC
TCTTTAGGAGTGAGCGCGTTAATTCAGTGTTCCTTGGTTTGTTTGCAAAAAAAAAAAAAA
AAA



Homology of Contig U35_3337 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None