barSeed - Barley Seed Development Database

Probe CUST_18280_PI390587928

Source Contig U35_3342

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18280_PI390587928	Hv_44K_v2	CTATAAACTTATAAAGCACACTCATATGCTCCAGGTGATAGTTGCAGCTGCGTCCTGTAA	2581	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.447	1.471	1.006	0.944	0.490	0.550
Raw	213.685	339.980	204.267	301.261	54.756	67.069

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78004.2	1903	2e-24	1602 - 1661	100	60 / 60	plus	ABC06092 ABC08599
JLOC1	JLOC1_51994.1	1667	8e-25	1519 - 1578	100	60 / 60	plus
Harvest21	ABC08599	2685	3e-25	2582 - 2641	100	60 / 60	plus	ABC08599
Harvest35	U35_3342	2685	3e-25	2582 - 2641	100	60 / 60	plus

Contig Sequence (2685 bp)

>U35_3342 2685 Hv_44K_v2
TATCTCTCTTATTCCCCTCCCGGAGCCCGAGCGCAGACCAGGAGAGGAGGAGGAGGAACA
GGAGAGAGAGGGAGAGAGCGCGCGCGGGAGCCCTAGCCCTGCCCCCAGCGCCCCGTCGCT
AGGGTTAGGGTCTCCCCCCCAGTTTCCCGCCCTCCCTTCGTCGCCTCGTCTCGTCTCACG
ATCCGCCCGCCGGCGTCCTGCCGCGTCTGCGCTTTTCGGCCTCGCCTGCCCGGCGCCAGC
AAATGCCGTGTGTCTGACCGTAGTGACTCGGAGGCGGCCCTATTGCTGTTGTTCCCGCCC
GTACGGCACGGCGGAGCTGAGGAGGTTCGGGGCGAGATCCGGTGAGCGCCGAGATGCAGC
AGGACCAGCGCAAGAAGAGTTCCGCAGAGGCAGAGTTTTTTACCGAATATGGCGACGCAA
GTCGATACAAGATTCAGGAAATCGTTGGAAAGGGCAGCTATGGTGTCGTGTGCTCCGCAA
TAGATGTCCACACCGGAGAGAAAGTGGCGATTAAAAAGATACATGATATCTTTGAGCACA
TATCTGATGCTGCACGGATTCTCCGTGAGATCAAGCTTCTGAGGCTCTTAAGACATCCTG
ACATCGTTGAGATAAAGCATATCATGTTACCTCCATCGAGGAGAGACTTCAAAGATATTT
ATGTCGTGTTTGAGCTCATGGAGTCTGATCTCCACCAGGTTATAAAGGCTAATGATGACT
TGACAAAGGAGCATTACCAGTTCTTTCTTTACCAATTACTCCGGGCTCTGAAGTACATTC
ACACTGCTAATGTTTATCACCGGGACCTAAAGCCAAAGAATATATTGGCAAATTCCAACT
GCAAACTGAAGATTTGTGATTTTGGATTGGCACGAGTTGCATTCAACGATACCCCCACAA
CAATCTTTTGGACGGATTATGTTGCGACAAGATGGTATAGAGCTCCAGAGCTCTGTGGTT
CCTTCTTTTCAAAGTATACACCCGCCATTGATGTCTGGAGCATCGGATGCATATTTGCTG
AGGTTTTGACAGGAAAGCCTTTGTTTCCTGGTAAAAATGTTGTACATCAGTTAGATTTGA
TGACTGATCTTCTGGGCACACCATCTATGGATACAATCTCTCGGGTCCGGAATGAGAAAG
CAAGGAGGTATCTGACCAGCATGAGAAAGAAAGAGCCGATCTCATTTTCACATAAATTTC
CCAATGCAGATCCTTTGGCCTTAGACCTGTTGCAAAGGCTTTTAGCGTTCGATCCAAAGG
ACCGCCCAACTGCTGAAGAGGCATTGTCTCATCCATACTTTAAAGGGCTTGCCAAGGTTG
AGAGAGAACCATCCTGCCAACCAATCACAAAAATGGAGTTTGAGTTTGAGCGTAGAAGAG
TGACAAAAGAAGACATAAGGGAGCTTATATTTCGTGAAATATTGGAATACCATCCACAAT
TGCTCAAAGACTACACCAATGGCACTGAAAGGACAACCTTTCTATACCCAAGTGCTGTTG
ATCAATTTAGAAAGCAGTTTGCTCATCTTGAAGAAAATACTGAGAATGGCCCTGTAGTTC
CAATGGATAGAAAGCACACCTCTCTTCCTAGGTCTACAATTGTTCATTCAGCTCCAATTC
ATGCCAAGGAACAACCCCGTATTGGCCCATCAAGGGATAAGCCTTCGCCTGACGAGTCTT
ATAAAAATCCTCGAGATTCAGAAAAATATTCTGGCAATGTCCAGAGAACCTCACTGGCTC
CACAAAGAGTGCCAACAGCAAGACCAGGAAGGGTTGTTGGTCCAGTTCTGCCTTACGAAA
ATGGTGGCATGAAGGATACATATGACCCACGAAGAGTGGCGGCAGCAATGAACTCAGGTT
ATGCTCCCCAACAACAAATCCCGCAAATATACGGTTATTATCAGACACCAGCAAAGTCAG
CTTGCTCCGAGCCATCGCAGGCCGAAATGTATACGCTGCACCAGCAGGCCTATGCTTGCG
CAAACAGCTCAACTGTGCCTGATGTTGCTCTGGACATGAGAGCACCACCCTTCCATCAAT
CAACAGTGCCAAAAAGGGGTTCTTCCGATAGGCTATCAGCAGAATCAAACCTATACTCGA
GATCCCTTAACGGCATGGCTCCAACCACATCAGGGGTGGCGGCAAGTGGTCACAGGAAGG
TCGGTGTTGTTCCCTACGGCGTGTCGCAGATGTACTAGTGGCCAATCAGGCGCATCCGAC
ATGCCTTCCTGGAGCGCGGCTGGTGGCGAACGAAACAGCGAGGAATGAAGTGGCGGATCA
AGCTTGGGTGGGGACTCCGCAAGGTTTACAGCGCAGGGCAGCCCAGGGTTGATGCTCATC
TTTGCTGACTGACCTATAAGCGTGTGAGCCATTTCATTCTGTTTTAGGCCATCAGCTTGT
TGTATCTGCCTGTGTGCACACTGGACGGGGGTGGGCAGTCAGTCCAGTGGCTTGTAATCT
GAGCTGTTTAGGCGCCGGTTACTTTTATAGGGGAGGAGACAGAAGGGAAAGGATGGAATG
CTAACCCGTTTTCTGTTGTATAGAGATGTTTGTCATCAATGTGCAACTTCACAAAGATAT
ACTATAAACTTATAAAGCACACTCATATGCTCCAGGTGATAGTTGCAGCTGCGTCCTGTA
ACGGGTCAAATCAGTGGCCCCCGGTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3342 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g43910.1	612	protein\|CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
Brachypodium v1_2	Bradi2g44350.1	616
Arabidopsis v10	AT2G42880.1	606	\| Symbols: ATMPK20, MPK20 \| MAP kinase 20 \| chr2:17840572-17843947 REVERSE LENGTH=606