barSeed - Barley Seed Development Database

Probe CUST_18267_PI390587928

Source Contig U35_3355

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18267_PI390587928	Hv_44K_v2	CGTCCCTGTGTATATATCTATATGGTCACTGTCTGTCTAATTGTCAAAAATTCATGGATT	1018	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354245	1067	2e-24	925 - 984	100	60 / 60	plus	ABC10333 ABC19576
MLOC	MLOC_45353.1	1484	2e-24	861 - 920	100	60 / 60	minus	ABC10333
MLOC	MLOC_45352.1	2789	2e-24	2047 - 2106	100	60 / 60	minus	ABC10333
MLOC	MLOC_45353.2	1260	2e-24	643 - 702	100	60 / 60	minus	ABC10333
JLOC1	JLOC1_29446.1	1143	8e-25	522 - 581	100	60 / 60	minus
Harvest21	ABC10333	826	3e-25	657 - 716	100	60 / 60	plus	ABC10333
Harvest35	U35_40480	319	3e-25	95 - 154	100	60 / 60	minus
Harvest35	U35_3355	1188	3e-25	1019 - 1078	100	60 / 60	plus

Contig Sequence (1188 bp)

>U35_3355 1188 Hv_44K_v2
ACTTTGCCGCACCCAACCACCGACCATTTAAGTCTCCCTTCCCAATCTCAACCAAGCAAG
CAACCAACCCCAAATCCCATCCCCGGAACCACCAGGAGGAAGAAGGCCAAGGCGATGAAG
AGGGAGGGGTACCAGCACGGCGCCGTCAGGGTCAACCGCAACAAGCTGCTGCGGGTCGCC
GGCGGCAGGAACGGCGACGGCGCGGCGTTGGAGCTCGTCGCCGGCGCGGCGTACGCGAGG
GCGCCGACGAAGCCGACCAACGCGTCGAGGGACACGGGGGGCAGGTGCCGCCGGCCGCGG
TGCGCGGGGTGCCACCAGCACCCGCCCGCCGCCGCCGCCGCATCCACCACCAAGGCGCGG
GACAAGGCCAAGGGCGCGCGCAAGCTGCGCGCCGCCGACGTCGCGCTCAACCACCGCCTC
GTCTCCTGGCGCGTCGTCGGCGGCGCCGGGGACGGCCCGGCCGCCACGGGCGGGTACAAC
TACAGGGGCGCCTCCGCGTCCGCCGTGCTCGCCCACCTCGCCGGCGGCAACAGCTGGCAC
GCCGAGGACGAGGAGGAGGACGACGACGACGCCGATCTCGAAGCCGCCGCCCCGAGGGGG
ATCTCCGACCTGTACGACCTCATCGTCGGCCTCCAGGCCGCGCCGGGCGTCCAAGGCGAA
GACGCCGATCGCACAGCAGCAGCAGACACCGACGAAATCGAGGAGCACGATGCTCAGACC
ACCGACGATGTCGACGACGAGGACGAGGAGGAGGACGACGACGGGTTCTGCGTGGTGCGG
GGCATCACCATCGCGCTCGAGTTCTCCGACGGGGAGGAGGACTGGATCGTGGTCTGATGA
TCGGATCTCATCTCATTCGTTTGCAAATAAGACGGCGTGCAACAGAGGTCAGCCGCCCGC
ACCCCTCTGCCTCTGCTGCTGCGCAATTCCCTTCAAATCTGCATCTGCATCTGCTCTGCT
ACTGTTAATTCATCGTGACCCTGTGTGTGTATACTGCTCTGTTCCTGTTAATTGATCGCG
TCCCTGTGTATATATCTATATGGTCACTGTCTGTCTAATTGTCAAAAATTCATGGATTAT
CATGACCTGAATGAATTTATAAAACATGTGTGAATAATAAAATTAAATTAATGGAGAAGG
GATTCATTTCTCCTCAGACCCTGTTTGTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_3355 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None