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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_18266_PI390587928Hv_44K_v2CTACAGCTCTTGATACCATCAGATCTGTGCAGGGTTTGCTTTTGTCTACTTTGAGGATGA677GeneList: tan
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.6530.9161.6761.9520.7151.013
Raw 9.24620.69832.58656.9307.35611.674



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_64522.214012e-24898 - 95710060 / 60minus ABC10880
MLOCMLOC_64522.413922e-24889 - 94810060 / 60minus ABC10880
MLOCMLOC_64522.323672e-24893 - 95210060 / 60minus ABC10880
MLOCMLOC_64522.123572e-24894 - 95310060 / 60minus ABC10880
JLOC1JLOC1_42376.215558e-25444 - 50310060 / 60plus
JLOC1JLOC1_42376.128878e-251776 - 183510060 / 60plus
Harvest35U35_33567653e-25678 - 73710060 / 60plus



Contig Sequence (765 bp)

>U35_3356 765 Hv_44K_v2
CCGCAGCGAGCGCCAGGCCAGGCCAGGCCGGAGAAGAAGCCTAGACCTAGACCTAGACCT
AGACCCTCTCCTCCCCTCTCCGGCGACGCAGGCAGGCAGGGTCTCGGATCGGATCTCGTC
GGCGGAGATGAGGCCCGTGTTCGTGGGGAACCTGGACTACGACACCCGCCACTCGGAGCT
CGACCACCTCTTCTACCGCTACGGCAGGATCCAACGCATCGACATGAAGTCAGGAACCAC
CGAGGCAAACATACATAGCTCCCCCCGGGGCTCCTCAACTCACCCTCCATTCACTCCTGA
CTCATCCGGCCACCACTCCCTGCACTTGGCCATCCGTTTTCCTGATGCACTGTAACATGT
TACCACTGCCAAGCATGTTTTGCCGGGACTGACATCAATCATCATGCGATTCGTGCCATG
CCATCAGTTCCATCATGCCATGCCATCAGTTCCATCATGCCATACCATGCCATGACTAGA
AGTATCCTCCAGGCATCAACTTGATTACTTGCTATGTGTGCTGTCTCAGTAAGCAATGTC
TGTGAGGCTCTTGGTCTGTAGAATGGTGAAGCATGTTCAGTGCCTCCAGTCATACCTTCT
TACTTTGGAACTTTTGGATATAAGTTGTACAACACCATGCTTAGCCTCACCATGAATGGA
ATCTACCCAGTACCTCACTACAGCTCTTGATACCATCAGATCTGTGCAGGGTTTGCTTTT
GTCTACTTTGAGGATGAACGTGATGGTGATGATGCCATACGGGCT



Homology of Contig U35_3356 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None