barSeed - Barley Seed Development Database

Probe CUST_18265_PI390587928

Source Contig U35_3357

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18265_PI390587928	Hv_44K_v2	TCTGCTAGAGCACATCCTAGCAGCAGGTGAAATAATTCAATGCTGAAATCCAGTACCTCC	1321	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80127.1	3619	2e-24	2448 - 2507	100	60 / 60	plus	ABC20300
Harvest21	ABC20300	791	3e-25	535 - 594	100	60 / 60	minus	ABC20300
Harvest35	U35_3357	1915	3e-25	1322 - 1381	100	60 / 60	plus

Contig Sequence (1915 bp)

>U35_3357 1915 Hv_44K_v2
CACGCCACCACCGCAGCGAGCGCCAGGCCAGGCCAGGCCGGAGAAGAAGCCTAGACCTAG
ACCTAGACCTAGACCCTCTCCTCCCCTCTCCGGCGACGCAGGCAGGCAGGGTCTCGGATC
GGATCTCGTCGGCGGAGATGAGGCCCGTGTTCGTGGGGAACCTGGACTACGACACCCGCC
ACTCGGAGCTCGACCACCTCTTCTACCGCTACGGCAGGATCCAACGCATCGACATGAAGT
CAGGGTTTGCTTTTGTCTACTTTGAGGATGAACGTGATGGTGATGATGCCATACGGGCTC
TGGATGGTTATCCCTTTGGCCCAGGGAGACGCAGACTTTCAGTGGAGTGGTCACGGGGCG
ACCGTGGAACCAGACGTGATGACCGTGATGGCTATAGTAAACCACCAGTGAATACTAAGC
CCACCAAGACACTGTTTGTAATTAACTTTGACCCAATCAACACAAGAGTCAGTGATCTTG
AACGGCATTTTGGTCCATTTGGGAGGATTTCAAATGTTCGGATAAGGAAGAACTTTGCTT
TTGTGCAATTTGAAACTCAGGAAGAAGCCTCAAAAGCACTAGATGCTACTCATTTGACGA
AGTTACTGGACAGGGTGATTTCTGTTGAGTATGCCTTCAGGGATGATAGTGAACCAGGTG
ACAAGTATGACAGGCCAAGTAGAGGTGCTGGTGGTTATGGAAGGCAGGATGACAGTTCAT
ATCGCCGTTCTGTTAGCCCAGTGTACCGAAGGTCACGACCTAGTCCTGACTATGGTCGTC
CAGTGAGTCCTCAGTATGGTGCATATGGCAGGAGCAGGAGTCCTGTCCGTGATCGCTATC
GAAGCCGATCTCCTGTCCAGCGCTCAAGATCCCCAGCTCCCAACAGAAGGGGTTATGACT
AATCGAGAATCATCTCGGTTATGGCAGTGAGGCCGCCTCCATCTGCTGTTTCAGCTCTAG
CATTAGTAAACAAGAACACTTCTGTAGCTGACACCGTGTTATAAGAAGTTGGACATGTCC
TCCGACACCTGCTTTGCCCTGTGTGCTAAGAAGTTATACCTATACTTTGACACCAGCTTT
GTGCCTAAATTGTGTCGTTTTCGAGCGGCCGCTGCAGGAACAAACTTATCGATGGATGAT
AAATGCTAGAAACAAAATGCTAGAAATTCCCCATGTTTGTTAACCACATAGTACCTTCCA
GTTGAGCAAGTCACTGCAACCACATAACTTTCAGTTAACATTAAATGATAAATGCCATGG
AAACATGAGCAATCAAATCTTAGTGTGTGGAGCAACTATAGCAACACAAATACACAATCT
CTCTGCTAGAGCACATCCTAGCAGCAGGTGAAATAATTCAATGCTGAAATCCAGTACCTC
CTACATGCGTGTGCAGGACTTGTCGAAGTCATCTGGTGCCACCCTGGTGATCCAATCGGC
AAGGGTTCGCTTGACCTCACCATGGTTGACGAAGGCAAGCTCGTACATGCTACACAAGTT
GACCACCACTGTCTCGTTGAGGGCCGCCGTGGGCATCGTCTCCAGGGCGCCCTCGAGCAC
CTTGATGGCATCGCCGAGGTCCCGCGAGTACATGAGGCATAGCGCCTTGTTGTTCAAGGC
GATGGCGTCAGAAGGGTCAGCCTCAATGCAGCGCTCGTACTCCCGCACCGCTGCGGCATA
GTCCTTAGCCACGATGCACTCGAGCGCGCGGTTGCGAGACAGGAGATTGTCGTGAGAGGA
GTCGCCGGCCACAACGGATTCAACGTGTGGAAGACCGCCGAGGCGGCAGCGAGGTTGCCG
ATCTGGAGGTGGGCATAGGCGAGGCGGGAGAGCAGGACCGGGTTGTCCGGCTCACGGGCG
ACGAGTTCAGCGACGAGGGCAAGGGCAACGTCGAACTCGCGGTGGGCGAGCCTGC

Homology of Contig U35_3357 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g02870.1	246	1e-105	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi5g01430.1	262	8e-118
Arabidopsis v10	AT3G61860.1	264	6e-72	\| Symbols: ATRSP31, RSP31, At-RS31, RS31 \| RNA-binding (RRM/RBD/RNP motifs) family protein \| chr3:22900311-22902159 REVERSE LENGTH=264