barSeed - Barley Seed Development Database

Probe CUST_18262_PI390587928

Source Contig U35_3360

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18262_PI390587928	Hv_44K_v2	TGACATGCCTACTCTGCCTTAAAGTGTTCAATGTTTTGTGTACATGTTGCTTACAAAAAA	1194	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.984	1.499	1.717	1.367	0.450	0.578
Raw	655.395	1543.125	1560.350	2000.390	225.170	314.316

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373922	2138	9e-22	2073 - 2127	100	55 / 55	plus	ABC08444
MLOC	AK355302	2259	9e-22	2188 - 2242	100	55 / 55	plus	ABC08444
Harvest21	ABC08444	1261	3e-25	1192 - 1251	100	60 / 60	plus	ABC08444
Harvest35	U35_3360	1263	3e-25	1195 - 1254	100	60 / 60	plus
Harvest35	U35_40934	807	1e-23	10 - 69	98	59 / 60	minus

Contig Sequence (1263 bp)

>U35_3360 1263 Hv_44K_v2
GAGGGCGCCTCCTCTCGGGCAGGTCCCTGCTCCGACCTCTTCGAGCCACGGCACGCGGAT
CGTCCTTCTGGAGGTTGCCGGCGTCCCGCCTGTGGGGGAGGTTTTCTCGCCTATGAAGAT
TTACAGGGCTTCTCAAAGGGTGGGTGGAAGAGTAGTCCATCTTGACTGTGATGACCTGTT
CGTCTTGCAGAAGAAGAAGAGAGAGGCAACAGATATATCATTCACCTACGAGGAGCTGAA
TGCGGCGACGTGGGGCTTCCCACGAGATCACCTCCTTGGAGAAGGCCTCTTAGGAAAGGT
TTATAAAGGTTTGCTGAACAGAAATGCGGTTGCAATAAGGATCCTCAACCCGGGATGGCA
AGGGAGCAGAGAGTTCTGCACAGAAGTTATGGTGTTGAGCAAGATGAATCACCCGAATCT
TGTCAAGCTTGTTGGCTTCTGCGCTGATGATGATCGGAGGCTTTTAGTGTATGAATTCAT
GCCTCTGGGTTCCCTGGAAACTCACATTTTCGATCTTCCCCCTGATAAGAAGCCTCTTGA
CTGGAATACAAGGATGAAGATACTTGCTGGGGCAGCTCAAGGCCTGAAGCATTTGCATGT
TAACTGCAACCCTCCTGTCATAAACTGTGGAGTGAAATGCGCGAATATTTTGCTTGGCGA
GGGATATCATCCAAAACTTTCAGATTTTTTTGTTCCAAGCAGAGTGGTGGGTACACCTGG
GTATTGTGCGCCAGAGTATCTTGAGAGCGGTCAGTTGACTACCAAGTCAGATGTTTACAG
CTTTGGTGTTGTTATACTGGAGGTTATCACAGGAAGAAAGGCTTACCCTTATTCAATGGG
TCAGAATCGAATGGGAGCTGAGCTTACTCTTGTTCAATGGGCCGCCAACTTGATCGCCAG
AAAGGATTTTGGAACGTTGGTAGATCAAATGCTTACAAATCAATACAGCATCACAGAATT
GTGCAGGGCCCTCACCATTGCTCGCATGTGCCTCAAAAGAACTGCCAGCGAGAGACCTGA
GATGGTGGATGTAGCTGCCGCACTCGCCTACATCTCGACTTAATGAAGAACGCGCTCAGC
AGCTCAAGATTCACCAGCCCGGGAAAGATGTAATAGATACTTGTTAATCTTAGCTTCCTC
CTCTTGCTGACATGCTGCTGCTGTAGCGTGTAGATGTGATATGCTGCCGTATATTGACAT
GCCTACTCTGCCTTAAAGTGTTCAATGTTTTGTGTACATGTTGCTTACAAAAAAAAAAAA
AAA

Homology of Contig U35_3360 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g17550.1	388	1e-106	protein\|serine/threonine-protein kinase, putative, expressed
Brachypodium v1_2	Bradi1g65930.1	356	4e-126
Arabidopsis v10	AT5G18610.1	513	3e-92	Protein kinase superfamily protein \| chr5:6192736-6195371 FORWARD LENGTH=513