- Probe CUST_18261_PI390587928
- Source Contig U35_3361
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_18261_PI390587928 | Hv_44K_v2 | GGGAGCAGAGAATTCTGCACAGAAGTTATGGTGTTGAGCAAGATGAATCACCCGAATCTT | 159 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK373922 | 2138 | 7e-23 | 1247 - 1306 | 98 | 59 / 60 | plus | ABC08444 |
| MLOC | AK372682 | 1601 | 7e-23 | 717 - 776 | 98 | 59 / 60 | plus | ABC08444 |
| MLOC | AK355302 | 2259 | 7e-23 | 1338 - 1397 | 98 | 59 / 60 | plus | ABC08444 |
| MLOC | MLOC_6917.1 | 1055 | 7e-23 | 823 - 882 | 98 | 59 / 60 | minus | ABC08444 |
| JLOC1 | JLOC1_4548.1 | 1204 | 4e-23 | 163 - 222 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC08446 | 595 | 3e-25 | 159 - 218 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC08445 | 515 | 1e-23 | 154 - 213 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC08444 | 1261 | 1e-23 | 359 - 418 | 98 | 59 / 60 | plus | ABC08444 |
| Harvest35 | U35_3361 | 597 | 3e-25 | 160 - 219 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_30157 | 539 | 1e-23 | 267 - 326 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_3360 | 1263 | 1e-23 | 362 - 421 | 98 | 59 / 60 | plus |
Contig Sequence (597 bp)
>U35_3361 597 Hv_44K_v2 GTGCTGCGCCGTGTTGCGTGTGGGGTAGGCAGCAAGATGGTGGTTCCTGTGATCCTCTTC CGTGTCATGGGCAGTGAAGCCGGCGGGCTACCCTTGGTCGCCATGAGCAGGGATAACCAA GGCTTGGTTGCAATAAAGATCCTCAACCCGGGATGGCAAGGGAGCAGAGAATTCTGCACA GAAGTTATGGTGTTGAGCAAGATGAATCACCCGAATCTTGTCAAGCTTGTTGGCTTCTGC GCTGATGATGATCGGAGGCTTTTAGTGTATGAATTCATGCCTCTGGGTTCCCTGGAAACT CACATTTTCGATCTTCCCCCTGATAAGAAGCCTCTTGACTGGAATACAAGGATGAAGATA CTTGCTGGGGCAGCTCAAGGCCTGAAGCATTTGCATGTTAACTGCAACCCTCCTGTCATA AACTGTGGAGTGAAATGCGCGAATATTTTGCTTGGCGAGGGATATCATCCAAAACTTTCA GATTTTTTTGTTCCAAGCAGAGTGGTGGGTACACCTGGTATTGTGCGCCAGAGTATCTTG AGAGCGGTCAGTTGACTACCAAGTCAGATGTTTACAGCTNTTGGTGTTGTTATACTG
Homology of Contig U35_3361 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g17550.1 | 388 | 1e-56 | protein|serine/threonine-protein kinase, putative, expressed |
| Brachypodium v1_2 | Bradi1g65930.1 | 356 | 3e-64 | |
| Arabidopsis v10 | None |