- Probe CUST_1825_PI390587928
- Source Contig U35_47265
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1825_PI390587928 | Hv_44K_v2 | AGCCATCAAGAAAATCATCAATGGCGCAGTCGCTGAATATGTTGAGAAGGAGAACCTCGA | 459 | GeneList: midnightblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.150 | 0.348 | 0.564 | 1.821 | 1.857 | 2.863 |
| Raw | 4.965 | 23.674 | 33.740 | 177.652 | 60.274 | 102.788 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK359477 | 1007 | 2e-24 | 498 - 557 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_34862.9 | 918 | 2e-24 | 517 - 576 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_34862.10 | 736 | 2e-24 | 350 - 409 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_34862.1 | 1427 | 2e-24 | 1060 - 1119 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_34862.8 | 1309 | 2e-24 | 927 - 986 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_34862.2 | 1421 | 2e-24 | 1054 - 1113 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_34862.3 | 1421 | 2e-24 | 1054 - 1113 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_22525.7 | 1014 | 8e-25 | 533 - 592 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_22525.6 | 1385 | 8e-25 | 904 - 963 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_22525.5 | 1379 | 8e-25 | 898 - 957 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_22525.4 | 992 | 8e-25 | 511 - 570 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_22525.3 | 1379 | 8e-25 | 898 - 957 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_22525.2 | 1005 | 8e-25 | 524 - 583 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_22525.1 | 993 | 8e-25 | 512 - 571 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC48146 | 616 | 3e-25 | 460 - 519 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_47265 | 616 | 3e-25 | 460 - 519 | 100 | 60 / 60 | plus |
Contig Sequence (616 bp)
>U35_47265 616 Hv_44K_v2 GGGAGGCTCTGCCGAGGAACGAGCCTCGTGAATCTAAGATGGTGAATACAAATGCACCAG GGGCCTTGGACGTCAACTTCAGTTTTTGCATGACGTACCTTCTTCGGTGTGCCTGATGAT ACTTCACAACAAATGTTCAAAACGAATCAGCCATAAAGTTTGCAGAGCGCTTCAGGAATT ATCTCCAGTACAATGTACAGAAAATCCCACGCAGGCGCCAATAGCCTTTAAAGATTTTCA TGTGTCTGTGCTTACTGAAGAAGATGGAGTGATAGAGACACAGATACGAGTAACTATTAG CAGTAAAATGACGGATTCTGTCTTTGAGAAAGTCTTATCAAAGCATATTGCCGCAGCACA ACCACTTCCAGGATTTCGGCGACTGAAAGGAGGGAAAACTCCAAATGTACCAAAAGAAGT CGCTCTGCACTTGATTGGACCATCAAAAGTGAAGAAAGCAGCCATCAAGAAAATCATCAA TGGCGCAGTCGCTGAATATGTTGAGAAGGAGAACCTCGACGCATCGAAGAACCTGAAGGT TCTGCAAAGCTACGAGGAGCTCGAGGCCGCGTTCGAGCCTGGAAAAGAATTCTGCTTTGA CGCTGCTGTCCATCTA
Homology of Contig U35_47265 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os09g34000.1 | 210 | 2e-68 | protein|expressed protein |
| Brachypodium v1_2 | Bradi4g35170.1 | 199 | 2e-92 | |
| Arabidopsis v10 | None |