barSeed - Barley Seed Development Database

Probe CUST_18259_PI390587928

Source Contig U35_3363

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18259_PI390587928	Hv_44K_v2	TTTGGTATCATCTCAGTTTGTTATAAGAGACATGTACTCGTTGGTCTTGATATATGTCTG	721	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.079	1.922	1.238	0.851	0.291	0.375
Raw	512.377	758.595	415.750	455.808	54.935	75.204

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_3363	825	3e-25	722 - 781	100	60 / 60	plus

Contig Sequence (825 bp)

>U35_3363 825 Hv_44K_v2
GCGAGTTAGCGCTCTGCAGCAGCGTCTGCTTGATGGCATCCGTTCCAAGGTTGATGATGT
TGTCATCAACGGTAGCATGGAGCACCGTTACGCGGGCAACCTAAACTTGTCATTTGCGTA
TGTCGAGGGCGAGAGCTTGCTGATGGGGCTGAAGGAGGTGGCTGTGTCAAGTGGCAGTGC
ATGCACCAGTGCTAGTCTGGAGCCTTCCTATGTGCTCAGGGCGCTTGGTGTGGATGAGGA
CATGGCACACACCTCCATTCGCTTTGGCATGGGCCGCTTCACCACCGAGGAAGAGGTGGA
CAGAGCAACTGAGCTCACTGTCCATCAGGTGCTTAAGCTCCGTGAGATGAGTCCACTCTA
TGAGATGGCTAAGGCAGGCATCGACATCAAGAGCATCCAGTGGTCGCAGCACTGAGACTC
TTTCCGCAATGCTGTTCGCTTGACTGCTTTAGATGTGCTCGGATGGACACATACATAGGC
ACGTTTGGTAGTTGAAGATAGTGTTGGCATCCTAATCATAATGATAGATCTGCGAAGATG
GTCGATGAGTATTATGTAAGGAGGCATGTTTGGCAGCGCTCAAACAATCCGGGGAGAGTT
AGATTTGTTCTCTAGCTGGATTGTATCAAAACACGAAATAATGATACCTGGTGTTGTACC
TGTCGAAAAACAATTTGAATTAGTTAAAGCGATGTGTATGTATTATGGCTGCAGATATGG
TTTTGGTATCATCTCAGTTTGTTATAAGAGACATGTACTCGTTGGTCTTGATATATGTCT
GTTAATATGTCAATTTGATATGTGAGACTAAAAAAAAAAAAAAAG

Homology of Contig U35_3363 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g16910.2	459	3e-78	protein\|cysteine desulfurase 1, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi4g28300.1	456	1e-83
Arabidopsis v10	AT5G65720.1	453	2e-71	\| Symbols: ATNIFS1, NIFS1, NFS1, ATNFS1 \| nitrogen fixation S (NIFS)-like 1 \| chr5:26296349-26297710 FORWARD LENGTH=453