barSeed - Barley Seed Development Database

Probe CUST_18258_PI390587928

Source Contig U35_3364

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18258_PI390587928	Hv_44K_v2	GGGTTTATCGTGTGTGCAATGTTTTCTCAGTAATAATCTACAGTCATTTGTTTGTGACAA	1496	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.232	1.553	1.249	0.842	0.289	0.251
Raw	974.589	1940.452	1354.990	1462.124	171.500	166.564

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39568.2	1294	9e-22	1152 - 1209	98	58 / 59	plus	ABC08186 ABC08187
JLOC1	JLOC1_25807.1	1276	5e-22	1153 - 1210	98	58 / 59	plus
Harvest35	U35_3364	1571	3e-25	1497 - 1556	100	60 / 60	plus
Harvest35	U35_39787	535	2e-22	105 - 162	98	58 / 59	minus

Contig Sequence (1571 bp)

>U35_3364 1571 Hv_44K_v2
CGCGCCCTCTCCACGGCAGCCCTGCCGGCCGACGCCCCCGCCGCGGAGGAGGAGGACGAC
GCCATCACCATCAAGGGCGTGCGCATCTCCGGCCGGCCGCTCTACCTGGACATGCAGGCG
ACCACGCCCGTCGACCCGCGGGTGCTCGACGCCATGCTCCCCTTCTACCTCTCCCGCTAC
GGCAACCCGCACTCCCGCACCCACCTCTACGGCTGGGAGTCGGACGCCGCCGTCGAGGAG
GCCCGCGCGAGCGTCGCGAGGCTCATCGGCGCCGACCCCAGGGAGATCTTCTTCACCTCG
GGCGCCACCGAGTGCAACAACATCGCCGTCAAGGGCGTCATGCACTTCTACCGCGACCGC
CGCCGCCACGTCATCACCACCCAGACCGAGCACAAGTGCGTCCTCGACTCCTGCAGGTAC
CTCCAGCAAGAGGGCTTCGAGGTCACCTACCTCCCCGTTCGCCCCGACGGCCTCATTGAC
GTCGCACAGCTCGCCGATGCCATCCGCCCCGACACCGGGCTCGTCTCCGTCATGGCCGTC
AACAACGAGATCGGCGTTGTCCAGCCGCTCGAGGAGATTGGCCGCATCTGCCGCGAGAAG
GGCGTGCCCTTCCACACAGACGCCGCGCAGGCTCTCGGGAAGATCCCAATTGATGTCAAC
CAGATGGGGATTGGACTCATGTCACTGTCCGCGCACAAGATTTATGGACCCAAGGGTGTG
GGTGCGCTCTACCTGCGCCGCCGCCCTCGCATTCGTGTGGAGCCACAGATGAGTGGAGGT
GGCCAGGAGCGGGGTATCCGCAGTGGCACGGTGCCAACGCCCATTGTTGTAGGATTTGGT
GCTGCCTGCGAAATTGCAGCCAAAGAGATGGACTACGATGAGAGGCGAGTTAGCGCTCTG
CAGCAGCGTCTGCTTGATGGCATCCGTTCCAAGGTTGATGATGTTGTCATCAACGGTAGC
ATGGAGCACCGTTACGCGGGCAACCTAAACTTGTCATTTGCGTATGTCGAGGGCGAGAGC
TTGCTGATGGGGCTGAAGGAGGTGGCTGTGTCAAGTGGCAGTGCATGCACCAGTGCTAGT
CTGGAGCCTTCCTATGTGCTCAGGGCGCTTGGTGTGGATGAGGACATGGCACACACCTCC
ATTCGCTTTGGCATGGGCCGCTTCACCACCGAGGAAGAGGTGGACAGAGCAACTGAGCTC
ACTGTCCATCAGGTGCTTAAGCTCCGTGAGATGAGTCCACTCTATGAGATGGCTAAGGCA
GGCATCGACATCAAGAGCATCCAGTGGTCGCAGCACTGAGACTCTTTCCGCAATGCTGTT
CGCTTGACTGCTTTAGATGTGCTCGGATGGACACATACATAGGTATATGGCCTTTAGCTG
TTCTTGTTATATCCTGTTTTTCTTCATAAGGGAATATGTACTATACCTGCTAGTGGAAGT
GTGTGACCTTGAACACTCTTTGAATCTGGTAGGCCACTACTGGCTAAGTTTTGAGAGGGT
TTATCGTGTGTGCAATGTTTTCTCAGTAATAATCTACAGTCATTTGTTTGTGACAAAAAA
AAAAAAAAAAA

Homology of Contig U35_3364 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os09g16910.2	459	protein\|cysteine desulfurase 1, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi4g28300.1	456
Arabidopsis v10	AT5G65720.1	453	\| Symbols: ATNIFS1, NIFS1, NFS1, ATNFS1 \| nitrogen fixation S (NIFS)-like 1 \| chr5:26296349-26297710 FORWARD LENGTH=453