barSeed - Barley Seed Development Database

Probe CUST_18255_PI390587928

Source Contig U35_3367

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18255_PI390587928	Hv_44K_v2	GTGGTTTCATCTTGTATACACACGGTTTTGTTTGAAGGAGATTGTCCGTTCGGTGCCAAA	1152	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.313	1.406	1.223	0.874	0.290	0.292
Raw	849.188	1432.824	1084.782	1214.720	143.586	156.496

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44484.3	3221	6e-24	2994 - 3052	100	59 / 59	plus	ABC10476
JLOC1	JLOC1_28831.4	1296	3e-24	1098 - 1156	100	59 / 59	plus
JLOC1	JLOC1_28831.2	1343	3e-24	1145 - 1203	100	59 / 59	plus
JLOC1	JLOC1_28831.1	1164	3e-24	966 - 1024	100	59 / 59	plus
Harvest35	U35_3367	1226	3e-25	1153 - 1212	100	60 / 60	plus

Contig Sequence (1226 bp)

>U35_3367 1226 Hv_44K_v2
TCGAGCACTGTTGGCCTTGGAAGGCATCCAGCACGGCAGCGTTCCCCACCCTCGCGTCGC
ATCCCAATTCGTTAATCCCATCGCCTTCCCCGATCCCTCTCGAGTCTCCTCCCCTCCGCT
CCCCCGTCCCCTCCCCCCTTCCTCCTCTCGGATCCGCCACCCCGCGGCCCGCCCCTCGCC
GCCGGCGACCATGTCCAAGTACGGCACCATCCCCACCTCATCCTCCTCCGCCGCGGGGGC
GGCTCACCTCGGCGGCGCCTCCCCGCTCGACTTCATCTCCCGCGCCAAGGCCCGCGGCGC
GACGGCGCTGGCCACCCGCCGGCCGTGGCGCGAGCTCGCGGACGTGCACGCCATCGGGCT
GCCCCCGAGCCTCGGCGACGCCTACCTGCGCGTGCGCGCCAACCTCGCCCACTTCGCCAT
GAACTACGCCATCGTCGTCCTCGTCGTCGTCTTCCTCTCCCTCCTCTGGCAGCCCATCTC
CCTCATCGTCTTCCTCGTGTGTATGGTCGGCTGGCTCGTCCTCTACTTCCTCCGCGACGA
GCCTGTCGTCCTCTTCGGCCGCGTCGTCGGCGACGGCGTGGTCCTCGCCGTGCTCGCTGT
TGTCACGCTCATCCTGCTGCTGCTCACCGGCGCGACCACCAACATCCTCACATCGCTGCT
CATCGGCTTCGTGCTCGTCGTGGTGCACGCCGCTCTGCACAAGGCGGAGGACAACGTCGA
CGATGAGGTCGGCCGCTGGTACGCGCCAGTGCCAGCGCAGCCGTCTCACTAGTGTGAGAT
TGCTCGCCCTCCAACTCTTGGGCCTGAGTGTGCTCGATTCTCCTTGTGTCCTCCCTTCGT
TCTCAAGTATTCTGTGAGTGTAAGTTTAGCATTGGTATATGGTCTCGGCCCAGTCAGGAT
GAACAAGAACTTGTAGCTGGTGGTTGGTCTTGCGCACGACACTGGTTCATCAGAAGCTTT
TGATCCAGTAATGATGGACGGCTGTAAACTTTGGTCGTTGCGTACAGTTCAAAGATTCCC
CCTTCTTTACATGTACGTACCAATTATGGGAGACAACGAATCTACACTCTGAAGTGTGAG
AATTTAGCTGGCAGGGGCCCTCTGTGAGGCTGGTATACATTACTTCGTGCTGGCAATTTC
TGATTTGCTCACGTGGTTTCATCTTGTATACACACGGTTTTGTTTGAAGGAGATTGTCCG
TTCGGTGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_3367 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g10010.2	202	4e-66	protein\|prenylated rab acceptor, putative, expressed
Brachypodium v1_2	Bradi2g05960.1	195	2e-72
Arabidopsis v10	None